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6
votes
1
answer
53
views
Variant present in 1000 genomes data but not in ESP
esp 1000genomes variant
1 day ago by Vivek  110•5 • 17 hours ago by rbagnall  50•2
2
votes
2
answers
52
views
Substituting SNPs on reference genome assemblies
mouse genome snp perl
1 day ago by Sakti  50•1•8 • 1 day ago by ashutoshmits  1,620•1•6
2
votes
1
answer
53
views
Converting GFF/GTF + reference to EMBL or GenBank ...any tools available?
embl gff genbank
1 day ago by jake9115  50•3 • 12 hours ago by Hamish  1,060•2•6
3
votes
1
answer
34
views
Remove uncultured organisms from blast results with biopython
biopython qblast filter
1 day ago by t.poisot  30•2
3
votes
2
answers
90
views
How to generate a heatmap of GO terms/Pathways
enrichment heatmap r python kegg go
1 day ago by Dataminer  1,690•3•16 • 1 day ago by enunvillafer  10•3
5
votes
3
answers
73
views
What exactly are the NCBI time limits for jobs submitted from a single IP?
python biopython ncbi
1 day ago by joe.cornish826  10•3 • 5 hours ago by SES ♦ 2,740•3•8
2
votes
2
answers
78
views
What are the best practices for SNP identification in RNA seq transcriptome data
snp rna-seq variant bwa
1 day ago by rocky.singh  10•2 • 7 hours ago by David Quigley ♦ 8,660•1•8•24
2
votes
1
answer
55
views
Does SAMtools tview hide PCR and optical duplicates?
samtools bam tview duplicates
1 day ago by Myk Skodar  90•4 • 1 day ago by ashutoshmits  1,620•1•6
1
vote
1
answer
51
views
Getting the average coverage from the coverage counts at each depth.
coverage genomecoveragebed depth bedtools
1 day ago by Jordan  160•5 • 1 day ago by Istvan Albert ♦♦ 31,430•2•15•35
1
vote
3
answers
59
views
Is there is tool for variable tandem repeats finding?
tandem
1 day ago by zeleniy.spb  10•2 • 1 day ago by gareth862  20•3
0
votes
0
answers
43
views
Has the Cluster of Orthologous Genes (COGs) database been updated since 2003?
cog
1 day ago by botellaflotante  0•1 • 1 day ago by Istvan Albert ♦♦ 31,430•2•15•35
1
vote
1
answer
31
views
What format are the results of a colorspace assembly using Velvet (velvetg_de) in? Double encoded or basespace?
solid assembly colorspace
1 day ago by lin.barnum  130•4 • 16 hours ago by Farhat  2,440•3•12
4
votes
1
answer
60
views
Alternatives to Newbler to assemble Ion Torrent reads?
assembly ion-torrent
1 day ago by 14134125465346445  1,010•2•5 • 1 day ago by Arpitha Hebbar  50•5
1
vote
1
answer
81
views
Is there a tutorial/guide explaining how to create a draft genome from assembled contigs?
contigs ngs ion-torrent draft-genome
1 day ago by Arpitha Hebbar  50•5 • 1 day ago by Josh Herr ♦ 3,080•2•7
0
votes
1
answer
31
views
Where to get the annotation file for the NimbleGen SeqCap EZ exome V1
exome variant bwa gatk
1 day ago by hanguangchun  0•1 • 1 day ago by Istvan Albert ♦♦ 31,430•2•15•35
0
votes
1
answer
47
views
Confusion related to the experiment r-th meta analysis for identifying differential gene expression
gene-expression pathway-analysis statistics meta-analysis
1 day ago by mikewhity  0•1 • 1 day ago by Istvan Albert ♦♦ 31,430•2•15•35
4
votes
2
answers
82
views
1 bookmark
getting sequence information from UCSC genome browser
genome-broswer nucleotide
2 days ago by anuragm  20•2 • 2 days ago by Alex Reynolds ♦ 3,380•1•8
1
vote
2
answers
100
views
2 bookmarks
ggplot2 : plotting multiple bar against same y axis. Visualization of samples!
visualisation ggplot2
2 days ago by k.nirmalraman  300•6
1
vote
0
answers
82
views
1 bookmark
Multiple Sequence Alignment in C
multiple-alignment c c++
2 days ago by Isaac Turner  50•3
2
votes
0
answers
56
views
Where to find chromosome band?
chromosome
2 days ago by Shaojiang Cai  40•5
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