Bioinformatics Answers

13 votes 3 answers 387 views 4 bookmarks	Beginners guide to homology modeling homology tutorial 18 months ago by Harpalss 240•1•5 • 18 months ago by Raghul 110•8
8 votes 1 answer 233 views 1 bookmark	Where can I find the old TIGR IDs? identifiers 18 months ago by K. Wyatt Mcmahon 50•3 • 18 months ago by Haibao Tang ♦ 2,520•2•10
4 votes 1 answer 169 views 1 bookmark	Building an average consensus structure pdb consensus 18 months ago by Harpalss 240•1•5 • 18 months ago by João Rodrigues 1,120•1•6
3 votes 1 answer 507 views 1 bookmark	optimum parameters (primer dimer dG, harpain dG, tm and something like this) for primer designing for real time pcr (syber green I) primer primer primer rt 18 months ago by Mohammad Reza 180•6 • 18 months ago by Michael Dondrup ♦♦ 20,070•1•11•30
14 votes 5 answers 800 views	How can I programmatically retrieve the GenBank records with accession numbers in the form JN######? genbank e 18 months ago by Jason Ebaugh 60•3 • 18 months ago by Yannick Wurm 1,640•4•14
4 votes 1 answer 253 views	Identify upregulated genes from ranks microarray meta 18 months ago by Wendy 50•1•1 • 14 months ago by Michael Dondrup ♦♦ 20,070•1•11•30
11 votes 1 answer 604 views	NCBI refseq viral genomes ncbi blast virus 19 months ago by Lorddoskias 80•3 • 14 months ago by Pierre Lindenbaum ♦♦ 46,730•6•33•81
8 votes 1 answer 282 views	Is there any publicly available documentation about Velvet's source code? velvet source code documentation 18 months ago by Tianyang Li 350•1•6 • 18 months ago by Pablacious 500•1•6
5 votes 1 answer 295 views 1 bookmark	Identify expressed genes from combined microarray data sets microarray data 19 months ago by Wendy 50•1•1 • 19 months ago by Sean Davis ♦ 11,730•3•14
10 votes 2 answers 289 views	microarray data analysis project microarray 19 months ago by Abdul Rawoof 20•1 • 19 months ago by Houkto 140•6
7 votes 2 answers 439 views	NCBI Blast Failing for Unknown Reasons biopython blast 19 months ago by Jesse J 130•4 • 19 months ago by Niek De Klein 1,960•5•12
9 votes 1 answer 607 views 3 bookmarks	limma Venn Diagram gene limma venn 19 months ago by Ly 20•3 • 14 months ago by seidel ♦ 3,220•3•7
5 votes 1 answer 489 views 1 bookmark	Whole genome wig to bigwig wiggle bigwiggle 19 months ago by Radhouane Aniba 690•1•8 • 19 months ago by Hanfei Sun 40•6
9 votes 2 answers 737 views 2 bookmarks	GFF parsing in BioPython is not so perfect python gff biopython 19 months ago by Gahoo 150•6 • 19 months ago by Brad Chapman ♦ 7,510•1•9•15
16 votes 3 answers 2.0k views 1 bookmark	FASTQ quality check fastq fastx 19 months ago by toshnam 470•1•14 • 19 months ago by Rm 5,600•10•17
1 vote 2 answers 540 views	Why do I get "floating point exception" using samview tview ? samtools 19 months ago by Pascal 1,040•7 • 19 months ago by Peter ♦ 2,770•2•9
3 votes 1 answer 194 views	Segment calling algorithm for mixed density array CGH cnv segmentation cgh acgh 19 months ago by Ps376 20•1 • 19 months ago by Sean Davis ♦ 11,730•3•14
1 vote 0 answers 302 views	"failed due to truncated file or corrupt BAM index file" error when downloading bam file from samtools [closed] samtools 19 months ago by Pascal 1,040•7 • 19 months ago by Pierre Lindenbaum ♦♦ 46,730•6•33•81
14 votes 2 answers 491 views 1 bookmark	RNA-Seq Transcript Length Bias - is there a 'standard' approach to accounting for it rna data next-gen sequencing 19 months ago by Travis 2,140•3•17 • 18 months ago by seidel ♦ 3,220•3•7
13 votes 3 answers 489 views 1 bookmark	Random access of lines in a compressed file having a custom tabulated format? gzip tabix c hdf 19 months ago by tflutre 180•6