Bioinformatics Answers

3 votes 1 answer 261 views	QC of a new study sample in a cost-effective way genotyping arrays qc study snp 18 months ago by Thomas 560•2•6 • 16 months ago by Matt Shirley ♦ 2,040•1•7
1 vote 1 answer 230 views	Exon array visual checking exon array visualization 18 months ago by Liyf 30•5 • 14 months ago by Malachi Griffith ♦ 4,880•3•14
2 votes 1 answer 239 views	Bioconductor problem with makeTranscriptDbFromBiomart (GenomicFeatures package) r rna bioconductor next-gen sequencing 18 months ago by Travis 2,150•3•17 • 18 months ago by Jeremy Leipzig ♦ 10,860•1•10•31
5 votes 2 answers 278 views	how do i know which lncRNA structures are solved experimentally ? non rna biological structure 18 months ago by Hani 20•3 • 18 months ago by Larry_Parnell ♦ 14,180•7•25
4 votes 1 answer 297 views 1 bookmark	ANNOVAR and protein sequence annovar protein amino 18 months ago by Chris 1,490•2•9 • 18 months ago by Larry_Parnell ♦ 14,180•7•25
4 votes 2 answers 341 views	How to extract specific long non coding RNA family from RFAM 10.0 database? non coding rna 18 months ago by Hani 20•3 • 18 months ago by Paul Gardner 170•3
9 votes 1 answer 541 views 3 bookmarks	Why do Blastall and Blast+ (blastn) give different results for what I beleive is the same search? blast blast 18 months ago by David M 370•1•6 • 18 months ago by Jon Binkley 40•1
2 votes 0 answers 423 views 1 bookmark	cufflinks not able to assemble transcripts in high read coverage cufflinks rna transcriptome 18 months ago by Abhi 810•1•10
22 votes 4 answers 468 views	parsing fasta based on header biopython python fasta 18 months ago by Matt 110•1 • 18 months ago by John Kern 40•2
5 votes 3 answers 975 views 1 bookmark	VDB field in samtools samtools 18 months ago by learnerforever 400•1•4 • 8 weeks ago by Marina Manrique 1,110•2•10
21 votes 4 answers 303 views 3 bookmarks	A list of regular-expressions for recognizing IDs from various databases database regular 18 months ago by Will ♦ 3,940•4•16 • 18 months ago by Pablacious 500•1•6
9 votes 3 answers 530 views	recommendations for dn/ds ratio analyses software? dn-ds selection libraries tool 18 months ago by Dj111 40•1 • 10 months ago by fransua 260•2•3
2 votes 2 answers 249 views	Optimum parameters or options for SHRiMP mapping shrimp solid mapping 18 months ago by Lim 10•1 • 18 months ago by Lim 0
2 votes 1 answer 596 views 1 bookmark	Getting Gene name from heatmap.2 heatmap gene limma r 18 months ago by Ly 60•4 • 18 months ago by Steve Lianoglou ♦ 2,780•2•5
0 votes 0 answers 312 views	GATK UnifiedGenotyper slipping on reference sequence gatk snp 18 months ago by Swbarnes2 1,050•2•6
10 votes 2 answers 237 views 2 bookmarks	all Children, grand children of GO ID gene ontology tree python 18 months ago by Sheila 210•1•5 • 18 months ago by Martin Morgan 830•2•5
4 votes 2 answers 187 views	Utility for downloading sequences from a list of mixed database keys database download sequence 18 months ago by Will ♦ 3,940•4•16 • 18 months ago by Andrew Su ♦ 3,870•3•22
1 vote 1 answer 363 views	Bus error from fastx toolkit's fastq_quality_filter fastx fastq short error fastq filter 18 months ago by Behindtherabbit 50•5 • 18 months ago by Istvan Albert ♦♦ 31,630•2•15•35
0 votes 1 answer 392 views	Affymetrix Genotyper Console output using for PLINK Run of Homozygosity plink 18 months ago by Msa 0 • 18 months ago by Matt Shirley ♦ 2,040•1•7
14 votes 2 answers 453 views 2 bookmarks	What's the difference between a PhD program in Bioinformatics and a PhD in CS with a concentration on Bioinformatics? career phd 18 months ago by Andy Wong 30•3 • 18 months ago by Philippe 1,560•3•8