Transcript Specific Expression Data

Question

[disco]

Hello dear bio-informats,

I am looking for a database which would help me find transcript specific RNA expression of a gene, quantitatively. I have tried UCSC, but I wasn't really successful. I have two alternative transcripts for two different genes for which I need to know the tissue specific expression. I'm expecting a differential expression compared to the other transcripts, which I would also need to see quantitatively. Could someone please suggest or advice on this situation?

Many thanks!

[Josh Herr]

Which organism are you studying? There are a few expression databases out there so it would help to know which direction to guide you.

[disco]

Hi! I'm sorry, I'm just seeing your response. I'm working on human genome. Actually, I have uploaded a new post. If you could please (and if it is not too much trouble) take a look and try to respond.. It would be extremely helpful because I feel like I'm stuck with this for sometime now..

Answer 1

[vj]

Hi you can look at the freely available encode expression data here. Transcript-level expression from RNA-Seq data for many cell lines they work on are provided in easily parsable gff files.