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if you can transform the bed to gff (galaxy has tools for that), you could also use liftoff which wraps all of this in a pipeline https://g…
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Another way to see hidden characters is to pipe them through octal dump: `cat infile | od -c`
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Align your assemblies to each other using an aligner like `lastz` ([**LINK**][1]). You could also use `blat` if you are sure the assemblies…
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It is going to take as long as it takes. You need to be patient and wait until the prompt returns. Based on speed of your CPU/disk things c…
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You could have looked at the file using `cat -vet` which would have shown all characters in the file. Printable and non.
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Thank you, using `dos2unix` worked perfectly!
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You may want to read [**this**][1]. I think you may be able to fix your adaper file by typing:
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I think the numbers you cite are the most extreme values that people will still accept. In most cases I would go for lower p-values (at lea…
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