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110,291 results • Page
1 of 2206
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0
votes
0
replies
4
views
Error in download library file in expression console software
expression
microarray
console
10 minutes ago by
Mohammad
• 0
1
vote
2
replies
40
views
ScRNA data
Data
ScRNA
updated 1 hour ago by
Dr William Klubinski
▴ 20 • written 2 hours ago by
abbas.waseem.gcu
• 0
1
vote
2
replies
35
views
extract all fasta sequence from db v5
blast
protein
updated 1 hour ago by
GenoMax
129k • written 2 hours ago by
Xylanaser
▴ 80
743
votes
162
replies
113k
views
101 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 4 weeks ago by
Biostar
1.8k • written 6.5 years ago by
Istvan Albert
98k
3
votes
2
replies
42
views
Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, but the Max expression are near 20,000
Expression
RNAseq
1 hour ago by
alwayshope
▴ 20
0
votes
4
replies
117
views
Demultiplexing bam file
demultiplexing
bam_file
Iontorrent
updated 1 hour ago by
GenoMax
129k • written 7 hours ago by
hasani.iut6
▴ 60
1
vote
2
replies
110
views
DEgs RNAseq
RNAseq
1 hour ago by
Juan
• 0
1
vote
3
replies
293
views
Counting intronic reads in bulk RNA-seq
rna-seq
updated 10 hours ago by
dsull
★ 4.2k • written 1 day ago by
John Ma
▴ 300
0
votes
2
replies
210
views
Single cell chemistry
cell
single
chemistry
updated 16 hours ago by
swbarnes2
13k • written 1 day ago by
David
• 0
0
votes
0
replies
78
views
Different alternatives for downloading GWAS summary statistics en masse
GWAS
download
data
16 hours ago by
Vincent Laufer
★ 2.8k
0
votes
6
replies
355
views
Why are some WES VCFs larger than others?
WES
sequencing
genomics
NGS
exome
updated 20 hours ago by
Vincent Laufer
★ 2.8k • written 1 day ago by
Kermit
▴ 80
0
votes
4
replies
269
views
SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC.
snakemake
17 hours ago by
Dhatri Badri
• 0
0
votes
0
replies
95
views
problem of Global Biobank Meta-analysis Initiative
GWAS
23 hours ago by
1362321710
• 0
0
votes
1
reply
134
views
DownsampleSam
picard
DownsampleSam
updated 22 hours ago by
Pierre Lindenbaum
154k • written 23 hours ago by
mathalfilip
• 0
0
votes
2
replies
208
views
ABySS genome assembler
ABySS
genome
k-mers
assembly
23 hours ago by
npavliukovec
• 0
0
votes
1
reply
138
views
Error while running Megahit
Megahit
updated 10 hours ago by
Mensur Dlakic
★ 23k • written 1 day ago by
abhiramiabhirami9072
• 0
0
votes
1
reply
162
views
How to deal with duplicated gene IDs in TCGA RNA expression data?
TCGA
Expression
mRNA
updated 16 hours ago by
Vincent Laufer
★ 2.8k • written 1 day ago by
Camilo Andres
▴ 30
1
vote
5
replies
281
views
Cutadapt error: too many parameters.
cutadapt
parallel
bash
updated 1 day ago by
GenoMax
129k • written 1 day ago by
DanielEB_fisk
• 0
0
votes
0
replies
130
views
corresponding clinical data from TCGA database of PSI values for CCA AS events in spliceseq database
TCGA
1 day ago by
dima
• 0
1
vote
0
replies
184
views
How to assess which cell population is most affected by treatmant in single cell rna seq data?
transcriptomics
single-cell
RNA
DEG
2 days ago by
abbas89
▴ 10
0
votes
3
replies
305
views
metric informing about the similarity of gene lists in OrderedList
orderedlist
updated 2 days ago by
Vincent Laufer
★ 2.8k • written 3 days ago by
kkolmus
• 0
18
votes
6
replies
6.4k
views
VCF header line counting
vcf
header
updated 2 days ago by
beausoleilmo
▴ 530 • written 8.3 years ago by
basalganglia
▴ 40
0
votes
1
reply
156
views
How extract specific SNP position from the bed file-Bedtools
bedtools
for
Help
updated 1 day ago by
GenoMax
129k • written 2 days ago by
rbaranikumar
• 0
0
votes
0
replies
443
views
Can I send my PyMol results to a web-page as a result for a submitted query? If not, how can I get a 3d render of a protein as a result for a user su…
protein-structure
pymol
protein
pdb
python
2 days ago by
Aatif Hashmi
• 0
2
votes
5
replies
389
views
Design matrix to remove technical replicate effect
edgeR
2 days ago by
ARD
▴ 10
0
votes
1
reply
234
views
Deferentially expressed gene with high log2foldchange by DESeq2; but not meaningful at the individual level
DESeq2
RNA-seq
DGEA
updated 1 day ago by
Vincent Laufer
★ 2.8k • written 2 days ago by
Sara
▴ 10
1
vote
2
replies
183
views
Abyss taking a Long time to run
abyss
assembly
genome
fastq
2 days ago by
Maliha
▴ 20
0
votes
2
replies
207
views
Import or read Snapgene .dna files into R
R
.dna
snapgene
2 days ago by
eggrandio
▴ 40
2
votes
2
replies
204
views
Segmentation fault Biopython pairwise alignment
biopython
alignment
updated 2 days ago by
Istvan Albert
98k • written 2 days ago by
antoine.fauchois92
▴ 20
0
votes
3
replies
296
views
Biological replicates in RNA-seq
RNA-seq
biological-replicates
updated 2 days ago by
mark.ziemann
★ 1.8k • written 3 days ago by
Mars
• 0
0
votes
0
replies
104
views
BEAST Divergence time Analysis
time
BEAST
BEAUti
divergence
2 days ago by
ahmadjoyyia
▴ 10
0
votes
0
replies
121
views
Differential Gene Expression analysis in heterogeneous tissues
RNA-seq
deseq2
updated 2 days ago by
Ram
39k • written 2 days ago by
txema.heredia
▴ 70
2
votes
2
replies
263
views
Plotting heat map with significance based on multiple columns
R
Python
Heatmap
updated 2 days ago by
Matthias Zepper
3.7k • written 3 days ago by
sidrah.maryam
▴ 50
1
vote
1
reply
157
views
Issue with MiSeq Demultiplexing: Unexpected Ns in I5_Index
MiSeq
Demultiplexing
Sequencing
updated 2 days ago by
GenoMax
129k • written 2 days ago by
sergio.fern1994
• 0
4
votes
5
replies
458
views
bitr() doesn't recognize the keys I've entered as valid gene symbols for my organism's database ('SYMBOL').
pathway-analysis
clusterProfiler
2 days ago by
Medeea
• 0
3
votes
2
replies
273
views
vg: Mapping fewer reads to a genome graph than a linear reference
giraffe
mapping
pangenome
vg
updated 1 day ago by
samuel.a.odonnell
▴ 470 • written 2 days ago by
John Lloyd
▴ 20
0
votes
1
reply
168
views
Variant Annotation
Variant-Annotation
VCF
R
updated 2 days ago by
Ram
39k • written 2 days ago by
Chethana
• 0
0
votes
0
replies
134
views
News:
course - Advanced Python programming
Programming
DeepLearning
Python
MachineLearning
2 days ago by
carlopecoraro2
★ 2.3k
0
votes
1
reply
193
views
too many zeros in 16S rRNA amplicon sequencing data
16S
rRNA
updated 22 hours ago by
andres.firrincieli
3.3k • written 2 days ago by
zhangdengwei
▴ 180
0
votes
0
replies
154
views
Job:
Looking for a internship or master's course in Bioinformatics
masters
internship
career
updated 2 days ago by
Ram
39k • written 2 days ago by
Khas-erdene
• 0
0
votes
1
reply
192
views
Seurat 'DoHeatmap()' hierarchical clustering
DoHeatmap
Seurat
clustering
updated 2 days ago by
fracarb8
▴ 940 • written 2 days ago by
sooni
• 0
3
votes
2
replies
257
views
Bioinformatics in drug designing
pharmaceutical
2 days ago by
nishimalhotra2612
▴ 40
0
votes
1
reply
157
views
Finding Kinetic Parameters from Western Blot images
image-processing
western-blot
updated 2 days ago by
Ram
39k • written 2 days ago by
Vijeth
• 0
3
votes
1
reply
3.2k
views
How To Interpret The Numbers In The Cnvnator Genotype Output
genotyping
updated 2 days ago by
lushjia
• 0 • written 10.4 years ago by
siyu
▴ 150
0
votes
0
replies
134
views
Chipseq data peak calling issue
Bioinformatics
sequencing
chipseq
RNA
data
2 days ago by
Adyasha
• 0
0
votes
2
replies
259
views
NanoSim Error "Please specify the training reads and its reference genome!"
NanoSim
RNA-seq
LongRead
1 day ago by
akainth
• 0
3
votes
4
replies
309
views
rose identifies super enhancers, how to output PDF files
PDF
rose
updated 2 days ago by
Ram
39k • written 3 days ago by
shuailong
• 0
0
votes
0
replies
139
views
Assigned taxonomy after dada2 only "NAs" or "Mitochondria"
16S
dada2
DECIPHER
ITS
taxonomy
2 days ago by
mattze731
• 0
0
votes
0
replies
129
views
I want to set the null hypothesis for the test of genetic correlation to rg=1.
correlation
LDSC
genetic
2 days ago by
Apprentice
▴ 130
3
votes
2
replies
220
views
How to download iGenomes from S3
iGenome
2 days ago by
Chris
▴ 100
110,291 results • Page
1 of 2206
Recent Votes
Comment: DEgs RNAseq
Answer: ScRNA data
Answer: extract all fasta sequence from db v5
Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, but the Max expression are near 20,000
Comment: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
Answer: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
A: extract dendrogram cluster from pheatmap
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Comment: Do bioinformaticians often break molecular biologists' hearts by being the first
by
jli.ww
• 0
Based on my personal experience as a computational biologist, I was not a co-first author even if I prioritized the candidates from the pub…
Comment: DEgs RNAseq
by
Juan
• 0
Dear Delaney Sullivan, thanks, finlly I did my analisys
Answer: ScRNA data
by
Dr William Klubinski
▴ 20
It seems like your single cell RNAseq data does not already contain the Cell Barcodes or Unique Molecular Identifiers in the standard way -…
Comment: Demultiplexing bam file
by
GenoMax
129k
> Part of the header of the bam file So perhaps there are more samples. https://www.biostars.org/u/21477/: `grep "SM*" header_of_bam`. Is…
Answer: extract all fasta sequence from db v5
by
GenoMax
129k
If you need the fasta sequence download from NCBI here (146 GB zip compressed file) : https://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz
Comment: ScRNA data
by
GenoMax
129k
Is this from a SRA dataset? If so it is possible that you can get the correct information in `DataAccess` tab. Provide the accession number…
Comment: extract all fasta sequence from db v5
by
Pierre Lindenbaum
154k
is version 4 compatible with blast v5 ? try to use version 4....
Comment: Pre-processing for Agilent microarray data?
by
solarchan7
• 0
thank you!
Comment: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
by
alwayshope
▴ 20
Thanks a lot! Very helpful detailed guidance! Appreciate it a lot!
Answer: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
by
Dr William Klubinski
▴ 20
The values you are getting, with a third quartile of appx 10 and a max of appx 20,000, seem quite standard for RNA-Seq analysis. The RNA-se…
Comment: Demultiplexing bam file
by
Pierre Lindenbaum
154k
you don't talk about the size in your question
Comment: Demultiplexing bam file
by
hasani.iut6
▴ 60
so why the size of bam file is 40 gig?
Comment: Demultiplexing bam file
by
Pierre Lindenbaum
154k
> I want to separate every sample I don't understand. In your header there is only one sample : "`13.02.1402_POOL2"`
Comment: Error while running Megahit
by
Mensur Dlakic
★ 23k
We can't even begin to guess what the problem was without an error message.
Comment: DEgs RNAseq
by
dsull
★ 4.2k
Is this single-cell RNAseq or non-single-cell RNAseq? For single-cell, you typically don't do standard "differential gene expression analy…
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