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Comment: inquiry related to snpsift
by
rheab1230
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0
Hey Kevin,
its working now.
Earlier I use conda to install the software. But that is not working.
So I went to bcftools site and downloaded…
Comment: What does that dip in the density plot mean from a single cell data analysis?
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m.sadman.sakib
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Thank you very much for the great explanation! Really appreciate it!
Comment: Which method is the best for using in "dba.count" in Diffbind R package
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m.sadman.sakib
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Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping
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cpad0112
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**Before**
```
$ tree .
.
├── 123_S1_R1_001
│ └── 123_S1_R1_001.fastq.gz
├── 123_S1_R2_001
│ └── 123_S1_R2_001.fastq.gz
├── 456_S25_R1…
Comment: SNP density plot of aedes genome using bed file
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Hamid Ghaedi
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There is no figure to look at that!
Comment: How to filter VEP results of "missing values"
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GenoMax
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Looking at the [examples of filters on this page][1] something to try `--filter "LoF_filter not exists"`or `--filter "not LoF_filter`?
…
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haven't used Pymol for a while but I think you can write a script to automate the analysis rather than doing interactively
Comment: inquiry related to snpsift
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Kevin Blighe
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Interesting, can you confirm the exact version 1.9 build, basically, please show the output of `bcftools --version`?
Also, which operating …
Comment: How to filter VEP results of "missing values"
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Yiming
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The VEP dose not seem to recognize " ". It returned "MSG: ERROR: Error parsing filter string - incomplete parentheses sets?"
Answer: Measuring pairwise distances between residues/atoms in structural alignment of p
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There are efficient and flexible distance calculators available in [BioStructures.jl][1] if you are okay with using Julia.
[1]: http…
Comment: How to filter VEP results of "missing values"
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Have you tried with a space between the `" "`?
Comment: inquiry related to snpsift
by
rheab1230
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In my case its not mentioned.
-a, --annotations <file> VCF file or tabix-indexed file with annotations: CHR\tPOS[\tVALUE]+
…
Comment: miRAnno—network-based functional microRNA annotation
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Shicheng Guo
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Interesting. It will be great to have a zoom meeting to share your tool.
Comment: inquiry related to snpsift
by
Kevin Blighe
75k
I am using the same version, and `--force` is listed:
bcftools annotate
About: Annotate and edit VCF/BCF files.
Usage:…
Comment: inquiry related to snpsift
by
rheab1230
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I am using version bcftools 1.9 and htslib 1.9
And also when i use bcftools annotate
--format function is not lister
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