updated 22 minutes ago by
jared.andrews07
★
13k
•
written 1 hour ago by
nivedha
•
0
0
votes
1
reply
19
views
0
votes
3
replies
45
views
0
votes
1
reply
19
views
updated just now by
Pierre Lindenbaum
144k
•
written 1 hour ago by
Jillian
•
0
0
votes
1
reply
63
views
updated 1 hour ago by
i.sudbery
14k
•
written 10 hours ago by
isha.lily20
▴
10
0
votes
1
reply
121
views
updated 2 hours ago by
debora.gisch
•
0
•
written 5 weeks ago by
sinha.puja
▴
20
0
votes
0
replies
18
views
5
votes
5
replies
4.1k
views
updated 2 hours ago by
chrchang523
9.2k
•
written 4.9 years ago by
William
★
5.0k
0
votes
0
replies
37
views
2 hours ago by
mchair18
▴
80
0
votes
4
replies
59
views
667
votes
160
replies
84k
views
98 follow
0
votes
1
reply
40
views
0
votes
0
replies
27
views
0
votes
0
replies
27
views
0
votes
5
replies
118
views
just now by
baijiangshan9726
•
0
0
votes
1
reply
58
views
0
votes
1
reply
44
views
updated 4 hours ago by
cpad0112
20k
•
written 4 hours ago by
a.mostafa5050
•
0
0
votes
2
replies
89
views
updated 5 hours ago by
Trivas
▴
180
•
written 7 hours ago by
marion.ryan
▴
40
0
votes
0
replies
39
views
0
votes
0
replies
41
views
5 hours ago by
Crunk
•
0
27
votes
17
replies
18k
views
14 follow
0
votes
0
replies
43
views
0
votes
2
replies
886
views
updated 6 hours ago by
Rory Stark
★
1.5k
•
written 2.5 years ago by
Researcher
▴
80
0
votes
3
replies
100
views
updated 7 hours ago by
Pierre Lindenbaum
144k
•
written 9 hours ago by
its.roops
•
0
0
votes
1
reply
56
views
0
votes
0
replies
33
views
0
votes
0
replies
44
views
8 hours ago by
meishun
•
0
5
votes
3
replies
1.8k
views
written 3.5 years ago by
biosol
▴
150
0
votes
4
replies
82
views
0
votes
3
replies
102
views
0
votes
1
reply
89
views
updated 11 hours ago by
benformatics
★
2.8k
•
written 1 day ago by
ktm
•
0
1
vote
2
replies
130
views
updated 12 hours ago by
adrian.altenhoff
▴
1000
•
written 20 hours ago by
Abel Sousa
•
0
0
votes
4
replies
117
views
1 hour ago by
ali
•
0
1
vote
3
replies
154
views
0
votes
2
replies
94
views
0
votes
0
replies
45
views
14 hours ago by
jamesymtang
•
0
0
votes
2
replies
138
views
0
votes
1
reply
105
views
updated 15 hours ago by
Mensur Dlakic
★
18k
•
written 18 hours ago by
braun_tube
▴
30
1
vote
1
reply
142
views
1
vote
1
reply
107
views
0
votes
1
reply
79
views
0
votes
0
replies
52
views
2
votes
3
replies
5.0k
views
updated 22 hours ago by
xsmailstop-sub
•
0
•
written 3.9 years ago by
salamandra
▴
450
0
votes
0
replies
68
views
22 hours ago by
tien
•
0
0
votes
2
replies
144
views
19 hours ago by
Rob
▴
120
1
vote
1
reply
95
views
0
votes
1
reply
94
views
0
votes
2
replies
135
views
1
vote
5
replies
185
views
updated 4 hours ago by
Ram
36k
•
written 1 day ago by
akilabioinfo
▴
10
0
votes
1
reply
117
views
0
votes
0
replies
77
views
1 day ago by
schulpen_91
•
0
Recent Votes
Recent Locations •
All
outer space, 1 minute ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 2 minutes ago
United Kingdom, 3 minutes ago
London, 3 minutes ago
United States, 4 minutes ago
UCLA, 4 minutes ago
USA, 4 minutes ago
Recent Awards •
All
Teacher to
finswimmer
15k
Popular Question to
Chvatil
▴
70
Scholar to
Devon Ryan
101k
Popular Question to
dare_devil
★
1.5k
Popular Question to
lakhujanivijay
5.6k
Popular Question to
Ian
5.8k
Popular Question to
CY
▴
640
Recent Replies
Comment: Can I successfully go from a bed file (narrowpeak) back to a bam file containing
by
Pierre Lindenbaum
144k
I'm sorry but it feels like asking "I've got a steak, can I get the cow ?"
Comment: How to count mapping rates for ChIP-seq?
by
baijiangshan9726
•
0
Thanks! I mean what kind of tools you use to calculate this?
Comment: sliding windows over genome
by
cmdcolin
★
2.1k
it seems like a workflow might be `samtools faidx yourfile.fa; bedtools makewindows -w 1000 -g yourfile.fa.fai`
Comment: sliding windows over genome
by
cmdcolin
★
2.1k
>windows at the chromosome level
why is this not what you want, or, what other way would you want it to work?
Answer: Project ideas
by
jared.andrews07
★
13k
This question has been asked many times:
https://www.biostars.org/p/81207/
https://www.biostars.org/p/128683/
https://www.biostars.org/p…
Comment: How to rearrange fasta headers
by
JC
13k
thanks, that is more clear, you can do with:
$ echo "tr|D7RED9|D7RED9_9MYCO NidA3 (Fragment) OS=Mycobacterium sp. py145 OX=767442 GN=n…
Answer: sliding windows over genome
by
Alex Reynolds
34k
Assuming your reference genome is `hg38` (replace it with the key for your assembly of choice), you can use `bedops --chop` and `awk` prett…
Comment: Beginners bioinformatics project with machine learning?
by
Jeremy
▴
110
This looks good to me. I use R for machine learning, although I believe Python is more popular. I would check with the people on Kaggle t…
Comment: How to count mapping rates for ChIP-seq?
by
Istvan Albert
93k
It is the number of primary alignments divided by the number of reads.
Comment: How to rearrange fasta headers
by
cpad0112
20k
check if one of these two works:
$ awk -F "GN=| " '/^>/{print ">"$10};!/>/' test.fa
$ seqkit replace -p '.*GN=(\w+)\s.*' -r '$1' t…
Comment: How to rearrange fasta headers
by
v.berriosfarias
▴
50
Thanks for your reply, sorry if I didn't explain well, the issue is that I have 334 sequences that are under a single fasta file. Each sequ…
Comment: How to count mapping rates for ChIP-seq?
by
baijiangshan9726
•
0
I see, thanks so much! So how do you usually count the mapping rate?
Comment: Count number of times a value appear in correlation matrix
by
ali
•
0
The Fisher transformation is applied after so it has nothing to do with it ( my bad I mentioned it ). My concern is why and how is possible…
Answer: how to find coordinates of 5prime and 3prime utr from transcriptome data generat
by
i.sudbery
14k
As far as I am aware, none of the standard transcript assembly tools (cufflinks/stringtie etc) have the ability to annotate the open readin…
Answer: WGBS data presentation
by
debora.gisch
•
0
Your question is not clear for me. If the file extension is a bedgraph file you can plot and see tracks throughout the genome with tool ca…
Traffic: 2178 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6