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107,931 results • Page
1 of 2159
Sort: Rank
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Views
Votes
Replies
0
votes
0
replies
26
views
ceres score in crispr screen
ceres
crispr
ngs
3 hours ago by
edus_bioinfo
▴ 20
1
vote
2
replies
1.3k
views
Error while trying to install salmon
software error
assembly
sequence
genome
updated 3 hours ago by
Chris
▴ 10 • written 2.3 years ago by
koushik.vf09
▴ 30
0
votes
1
reply
99
views
finding error to run edgeR, error in ploting MDS and after that in model matrix also
DEGs
updated 4 hours ago by
Gordon Smyth
★ 5.4k • written 6 hours ago by
rupali
• 0
0
votes
0
replies
38
views
Issues Using DMRcate and rmSNPandCH
DMRcate
R
4 hours ago by
Indira
• 0
715
votes
159
replies
104k
views
100 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
tutorial
News
handbook
updated 4 months ago by
Biostar
1.5k • written 6.2 years ago by
Istvan Albert
96k
0
votes
0
replies
39
views
Statistical test on two phylogenetically remote groups
phylogeny
ANOVA
5 hours ago by
liorglic
★ 1.1k
0
votes
3
replies
123
views
samtools markdup in Rsamtools
remove
samtools
Rsamtools
duplicate
R
updated 6 hours ago by
joe
▴ 350 • written 7 hours ago by
Learner
• 0
0
votes
0
replies
63
views
Network analysis for protein protein chip-seq
score
protein
network
chip-seq
analysis
9 hours ago by
Ankit
▴ 390
0
votes
0
replies
64
views
Sequence Homology locator
Sequence
Homology
Genome
finder
9 hours ago by
himalayan_yeti
• 0
0
votes
0
replies
55
views
How to find the most frequent alternative-splicing event from DEXSEQ data?
DESEQ
RNA-SEQ
DEXSEQ
10 hours ago by
STARDUST
• 0
1
vote
0
replies
61
views
How to use CAFE from Orthofinder Results
expansion
orthofinder
cafe
gene
10 hours ago by
ahmadjoyyia
▴ 10
2
votes
2
replies
166
views
To batch correct or analyse separately?
scRNA-seq
batch
correction
updated 9 hours ago by
predeus
★ 1.8k • written 20 hours ago by
bompipi95
▴ 50
1
vote
2
replies
184
views
Issue with hmmcalibrate during tutorial.
hmmsearch
hmmbuild
hmmer
hmmcalibrate
10 hours ago by
apcreyes29
• 0
1
vote
0
replies
122
views
SNP calling
SNPcalling
13 hours ago by
abozorgmehr1985
▴ 10
0
votes
0
replies
107
views
News:
Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Bioinformatics
Programming
Python
15 hours ago by
carlopecoraro2
★ 2.2k
3
votes
2
replies
238
views
How to merge unique/non overlapping genes between 2 gene model GFF3 files?
gff3
updated 17 hours ago by
Juke34
7.5k • written 1 day ago by
William
★ 5.1k
0
votes
0
replies
98
views
gistic- overlapp
CNV
GISTIC
TCGA
18 hours ago by
Hanie
• 0
0
votes
0
replies
115
views
Protocol to detect chromosomal ploidy from WGS VCF?
wgs
ploidy
1 day ago by
optimistsso4co3
▴ 100
0
votes
1
reply
139
views
Obtaining every"Protein ID" from a genome in OMA
OMA
orthologs
updated 1 day ago by
clement.train
▴ 40 • written 1 day ago by
christyh
• 0
0
votes
0
replies
99
views
SpliceAi same variant , different score
SpliceAi
updated 1 day ago by
Pierre Lindenbaum
152k • written 1 day ago by
vvasta
• 0
0
votes
1
reply
154
views
Diffbind losing peaks when going from small to larger consensus peak set
DiffBind
1 day ago by
tara.mcintyre
• 0
0
votes
0
replies
108
views
GSEA multiple group analysis
gsea
single-cell
1 day ago by
piotto
▴ 10
0
votes
0
replies
127
views
want the codes for cuffdiff , NIOSeq , bayseq to perform DEGs.
DEGs
updated 1 day ago by
ATpoint
68k • written 1 day ago by
rupali
• 0
0
votes
1
reply
161
views
RNA Editing data from RNA-seq
Editing
RNA
updated 1 day ago by
Juke34
7.5k • written 1 day ago by
Genetics
• 0
0
votes
2
replies
173
views
cellranger-arc mkfastq Error: bcl2fastq was killed with signal -11
bcl2fastq
cellranger-arc
mkfastq
cellranger
1 day ago by
Yingying
• 0
0
votes
0
replies
122
views
Unrooted consensus tree [Bio.Phylo]
consensus
phylo
biopython
1 day ago by
Jimpix
▴ 10
0
votes
3
replies
173
views
PLINK2 selecting variants based on INFO score
plink2
updated 2 hours ago by
chrchang523
9.9k • written 1 day ago by
m.c.roozen
• 0
0
votes
3
replies
221
views
DESeq2 results function runs very slow on Windows 10
r
deseq2
updated 1 day ago by
ATpoint
68k • written 1 day ago by
Taha
• 0
1
vote
2
replies
172
views
How can I convert this pairwise format to fasta?
fasta
python
bash
updated 1 day ago by
GenoMax
125k • written 1 day ago by
SaltedPork
▴ 170
0
votes
2
replies
208
views
Trimmomatic
Trimmomatic
RNA
quality-check
updated 1 day ago by
Ram
37k • written 2 days ago by
Monia
• 0
0
votes
0
replies
91
views
What is the difference between gseapy.prerank and gseapy.gsea?
gseapy
gsea
1 day ago by
bioinfo
▴ 20
1
vote
2
replies
150
views
When you convert a BAM back into a FastQ do you get the original Fastq?
bam
FastQ
updated 1 day ago by
GenoMax
125k • written 1 day ago by
louis-gil
• 0
3
votes
6
replies
267
views
Which file and data structure is used to create volcano plot from scRNA-Seq experiment?
plot
Volcano
1 day ago by
Chris
▴ 60
0
votes
1
reply
102
views
Converting large GSM from GEOquery into a minfi or limma workable set
minfi
methylation
limma
GEOquery
R
updated 1 day ago by
Basti
★ 1.3k • written 1 day ago by
Edward E-B
• 0
1
vote
1
reply
112
views
bwa mem duration?
performance
mapping
bwa
updated 1 day ago by
ATpoint
68k • written 1 day ago by
lacb
▴ 30
8
votes
9
replies
2.6k
views
7 follow
Translating gene names to entrez id's
database
annotation
biopython
gene
python
updated 1 day ago by
Ram
37k • written 22 months ago by
Julian
• 0
0
votes
1
reply
143
views
Gene ontology with locus tags
ontology
locus
gene
tags
updated 1 day ago by
dthorbur
▴ 260 • written 1 day ago by
sea.joson
▴ 10
3
votes
4
replies
328
views
High downstream gene expression
downstream
High
Gene
expression
15 hours ago by
yoser4
▴ 10
0
votes
1
reply
151
views
Clustering and dynamic tree cutting
dynamicTreeCut
Clustering
data
RNAseq
cutreeDynamic
updated 1 day ago by
andres.firrincieli
3.1k • written 1 day ago by
harish
• 0
0
votes
6
replies
261
views
STAR is running but .sam file size does not increase after hours mapping
STAR
RNA-seq
mapping
SAM
updated 1 day ago by
GenoMax
125k • written 1 day ago by
luzglongoria
▴ 40
3
votes
4
replies
351
views
Annotating ENS codes to gene name
expression
RNA-seq
DEseq2
updated 15 hours ago by
Apex92
▴ 260 • written 1 day ago by
yoosefyud
▴ 40
0
votes
5
replies
379
views
HTSeq error processing GFF file
HTSeq
GFF
GTF
updated 16 hours ago by
barslmn
★ 1.2k • written 1 day ago by
ibq.enriquepola
• 0
0
votes
0
replies
115
views
which tool to use for Transposon structure finding CENSOR or repeat masker ??
transposon
DNA
repeat
CENSOR
masker
1 day ago by
manaswiniparija3
▴ 10
0
votes
1
reply
171
views
Using Entrez Utilities to query the Nucleotide database by collection_date
ncbi
entrez
updated 1 day ago by
GenoMax
125k • written 1 day ago by
anomalous.lexeme
• 0
0
votes
0
replies
124
views
scATAC merging of files
Signac
scATAC-seq
2 days ago by
bioinformatics.girl
• 0
0
votes
1
reply
189
views
Manual Polygenic Risk Score calculation
calculation
steps
PRS
updated 2 days ago by
Sam
★ 4.6k • written 2 days ago by
Roy
▴ 10
4
votes
4
replies
345
views
2D structure of a custom protein (not in any databases) from a PDB file.
Tool
Pymol
PDB
protein
structure
updated 2 days ago by
Jiyao Wang
▴ 290 • written 3 days ago by
Hansen_869
▴ 50
0
votes
0
replies
134
views
what does ALT ID DUP refer to when ALT ID for copy number are already specified
ALT
ID
CNV
VCF
2 days ago by
anubratadas
▴ 20
0
votes
0
replies
152
views
How to use gseapy after scanpy?
gsea
single
cell
enrichR
gseapy
1 day ago by
bioinfo
▴ 20
0
votes
0
replies
137
views
VNTR genotyping
NGS
VNTR
genotyping
2 days ago by
Genotepes
▴ 950
107,931 results • Page
1 of 2159
Recent Votes
Deseq2 with one factor and multiple levels
Answer: Error while trying to install salmon
Answer: Forcing Installation Of DMRcate
Gene Expression Omnibus Data Mining (IA): Quick and easy download of GEO data
SNP calling
Comment: Annotating ENS codes to gene name
1000 genomes project reference panel - GRCh38
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Recent Replies
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon
by
Chris
▴ 10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
by
Gordon Smyth
★ 5.4k
First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools
by
joe
▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools
by
Pierre Lindenbaum
152k
> But other solutions are also fine: bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools
by
ATpoint
68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately?
by
predeus
★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny
by
炫
• 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny
by
炫
• 0
您好,我的问题和您的一模一样,请问您这个问题最终解决了吗
Comment: Issue with hmmcalibrate during tutorial.
by
apcreyes29
• 0
If that's the case then I'll just proceed then. Thank you!
Answer: To batch correct or analyse separately?
by
ATpoint
68k
Instead of writing that all down I recommend to read the relevant part of the Bioconductor scRNA-seq book (OSCA) which covers the "how's" a…
Answer: Issue with hmmcalibrate during tutorial.
by
Mensur Dlakic
★ 22k
Pretty sure that `hmmcalibrate` does not exist in HMMer version 3+ as the models are internally calibrated. I think you are using a manual …
Comment: High downstream gene expression
by
yoser4
▴ 10
Thank you for your reply. Your answer has helped me. I am a novice in scientific research, and the reading of literature is really poor. …
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