21 hours ago by
BioinfGuru
★
1.7k
5
votes
4
replies
559
views
1
vote
1
reply
248
views
0
votes
4
replies
484
views
1
vote
1
reply
204
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
jammydodger123456
▴
40
0
votes
1
reply
321
views
0
votes
2
replies
321
views
1 day ago by
22211020193
•
0
0
votes
0
replies
140
views
1
vote
2
replies
239
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
aniigodwinn
•
0
2
votes
3
replies
370
views
2
votes
3
replies
253
views
2
votes
10
replies
617
views
2
votes
2
replies
349
views
0
votes
0
replies
273
views
4
votes
2
replies
1.7k
views
2
votes
7
replies
710
views
updated 17 hours ago by
joe
▴
510
•
written 2 days ago by
quentinperriere
•
0
0
votes
1
reply
168
views
updated 2 days ago by
DKA
▴
40
•
written 2 days ago by
james.melhorn
•
0
3
votes
4
replies
362
views
0
votes
1
reply
157
views
1
vote
2
replies
165
views
0
votes
0
replies
126
views
2 days ago by
chemokine-1
▴
10
0
votes
4
replies
432
views
0
votes
0
replies
187
views
0
votes
2
replies
184
views
0
votes
0
replies
142
views
2 days ago by
Ali
•
0
2
votes
4
replies
274
views
2 days ago by
kirill.zaslavsky
•
0
0
votes
2
replies
213
views
5
votes
4
replies
2.8k
views
updated 2 days ago by
hamarillo
▴
70
•
written 5.6 years ago by
silviajserrano
▴
50
2
votes
2
replies
208
views
3
votes
7
replies
379
views
0
votes
0
replies
127
views
0
votes
0
replies
121
views
3
votes
3
replies
377
views
0
votes
0
replies
132
views
3
votes
6
replies
10k
views
updated 2 days ago by
Bioinfotec
▴
10
•
written 7.5 years ago by
nut_B
▴
10
1
vote
6
replies
347
views
updated 2 days ago by
shenwei356
8.4k
•
written 3 days ago by
Jérémie
•
0
1
vote
1
reply
155
views
0
votes
0
replies
155
views
3 days ago by
Ben_Ensembl
★
2.4k
2
votes
3
replies
243
views
updated 3 days ago by
GenoMax
141k
•
written 3 days ago by
lorena9132
•
0
0
votes
0
replies
155
views
0
votes
0
replies
127
views
3 days ago by
solomoncharles77
▴
90
4
votes
2
replies
233
views
0
votes
2
replies
286
views
1 day ago by
Sudip
•
0
1
vote
2
replies
236
views
0
votes
2
replies
343
views
2
votes
2
replies
361
views
0
votes
0
replies
108
views
5
votes
4
replies
255
views
2
votes
5
replies
351
views
1
vote
1
reply
275
views
updated 3 days ago by
andres.firrincieli
3.6k
•
written 7 days ago by
Milly
•
0
Recent Votes
Recent Locations •
All
United States, 1 minute ago
United Kingdom, 3 minutes ago
Stony Brook University, NY, 3 minutes ago
Switzerland, 4 minutes ago
United States, 4 minutes ago
Berlin, 5 minutes ago
Cambridge, MA, 7 minutes ago
Recent Awards •
All
Scholar to
damian.szk
▴
70
Popular Question to
alphaflylizard
•
0
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
DanielEB_fisk
▴
20
Scholar to
Pierre Lindenbaum
161k
Scholar to
Dinmukhamed
•
0
Recent Replies
Answer: Cellranger count error: Input FASTQ file ended prematurely
by
bp22
▴
60
Dear all,
The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
Ram
43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
Comment: Should I apply doublet detection for each pool seperately?
by
Ram
43k
Do not delete posts that have received feedback,
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
by
_quantum_girl_
▴
10
They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
Comment: RNA seq differential expression analysis
by
BioinfGuru
★
1.7k
https://help.galaxyproject.org/
Answer: RNA seq differential expression analysis
by
Mohamed Abderrahmane
▴
10
The tool RSEM, which performs transcript quantification for RNA-Seq data, provides FPKM.
Comment: Illumina reads preprocessing best practice for snp calling applications
by
Enrique
•
0
Hi! I'm still interested in the step that you use for the SNP calling. Did you use `trimmomatic` or another tool for trimming before mappin…
Comment: Could you please assist in identifying this cluster?
by
ATpoint
81k
The information do not suffice. Please show plots and identified marker genes. Also, make sure it is not a trash cluster with low number of…
Comment: Free/open source 23andme-like analysis
by
joe
▴
510
Thank you, I added 'accurate' now ;)
I'm surprised to find out that there isn't some tool like multiqc that just summarizes all this infor…
Comment: Memory usage of picard Samsort
by
ATpoint
81k
Guys, just use `samtools sort` which won't get you into trouble with any of that.
Comment: Ciriquant not configuring hisat2 indexed files
by
Carlo Yague
8.6k
I don't know for sure, but I think that decreasing the amount of threads (1 or 2 instead of 4) will decrease the memory requirements of the…
Answer: Memory usage of picard Samsort
by
tamas.malkocs
•
0
For me, setting `TMP_DIR` (`--TMP_DIR /home/tmp`) didn't work in picard 2.21.1. What solved the issue was setting the environmental variabl…
Comment: Ciriquant not configuring hisat2 indexed files
by
Atul K.
•
0
it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
Comment: Adding CB tag to bam file
by
Maria
•
0
I checked Picard ```AddOrReplaceReadsGroups``` and ```AddOATag```. Is that what you're referring to?
Traffic: 2526 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6