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Recent Replies
Comment: Differential protein expression analysis
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Ribo
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Thank you!
Is there a recommended tutorial for proteomics analysis?
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I clustered the samples into subtypes and am now comparing the differential expression across the subtypes.
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No, your code isn't correct. You are testing an intercept equal to zero instead of testing for a logFC. I wonder what comparison you were t…
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Using `filterbyname.sh` from [**BBMap suite**][1]:
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Yeah, I added the design matrix. `design <- model.matrix(~0+group)`. These are raw counts.
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Soft masking the genome (unless something changed) not make any difference for STAR. Depending on how your RNA-Seq is done (Illumina? paire…
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Hi! Thanks for sharing your solution!
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Looks like there are five Clarias genomes:
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Again, thank you so much for these very clearly explained summaries. After reading some articles on the matter, i feel i have a much better…
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Some people I know have used filter-fastq successfully: https://github.com/Floor-Lab/filter-fastq
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> but none of them work for me
https://meta.stackexchange.com/questions/147616/
Comment: Extract sequences from a fastq file by a list of IDs
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https://meta.stackexchange.com/questions/147616/
Comment: Extract sequences from a fastq file by a list of IDs
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I have tried this one before but the output file is empty
Comment: Extract sequences from a fastq file by a list of IDs
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mhpakdel96
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I have tried all of them but none of them work for me
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