updated 10 days ago by
psb7
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20
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written 5.6 years ago by
Kevin Blighe
87k
98
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106
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26 follow
362
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82
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35 follow
164
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34 follow
103
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42
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34 follow
updated 10 days ago by
Jeremy Leipzig
22k
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written 10.4 years ago by
14134125465346445
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3.6k
10
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37
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12k
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21 follow
updated 8 days ago by
aziz.hammou
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0
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written 8.8 years ago by
kevluv93
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170
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36
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5.7k
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updated 1 day ago by
Ram
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written 5.7 years ago by
Kristin Muench
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620
49
votes
30
replies
11k
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13 follow
updated 21 days ago by
Istvan Albert
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written 8.1 years ago by
Ram
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81
votes
27
replies
20k
views
12 follow
85
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24
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23k
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17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 1 day ago by
Gordon
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0
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written 3.5 years ago by
Hamid Ghaedi
3.2k
23
votes
23
replies
9.8k
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6 follow
updated 1 day ago by
Ram
43k
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written 5.3 years ago by
iraia.munoa
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130
13
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22
replies
11k
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updated 1 day ago by
Ram
43k
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written 6.8 years ago by
lessismore
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1.3k
57
votes
22
replies
28k
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7 follow
updated 13 days ago by
Ram
43k
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written 4.5 years ago by
Arindam Ghosh
▴
510
11
votes
22
replies
4.1k
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18
votes
20
replies
4.4k
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6 follow
updated 9 days ago by
Ram
43k
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written 7.5 years ago by
morteza.mahmoudisaber
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80
7
votes
20
replies
6.3k
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7 follow
updated 7 days ago by
e.r.zakiev
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190
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written 4.3 years ago by
kevin.stachelek
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80
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20
replies
4.1k
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updated 9 days ago by
Ram
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written 6.2 years ago by
pablo61991
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90
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22
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updated 1 day ago by
Ram
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written 9.5 years ago by
james.lloyd
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100
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17
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6.0k
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9 follow
3
votes
16
replies
2.7k
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updated 9 days ago by
Ram
43k
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written 7.9 years ago by
1234anjalianjali1234
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50
0
votes
16
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1.0k
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17
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16
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14k
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9 follow
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4.9k
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6 follow
updated 27 days ago by
vague-barracuda-4686
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written 4.8 years ago by
Apprentice
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160
105
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15
replies
112k
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16 follow
updated 29 days ago by
xiaoleiusc
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140
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written 11.9 years ago by
GouthamAtla
12k
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12k
views
11 follow
22
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28k
views
7 follow
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8 follow
12
votes
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2.4k
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8 follow
written 4.9 years ago by
Gabriel Wajnberg
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70
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votes
14
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899
views
13
votes
13
replies
18k
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9 follow
updated 10 days ago by
ummeswaiba
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written 10.3 years ago by
biostar
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170
4
votes
13
replies
759
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updated 2 days ago by
BioinfGuru
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1.7k
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written 7 days ago by
matteo.levorato
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6
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6
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replies
9.0k
views
8 follow
updated 7 days ago by
Mike Smith
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2.0k
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written 2.8 years ago by
lincaijin1994
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40
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votes
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replies
5.6k
views
6 follow
30
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717
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22 days ago by
bioinfo_enthusiast
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0
54
votes
12
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28k
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12 follow
updated 9 hours ago by
kjngo
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0
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written 12.0 years ago by
Gabriel R.
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2.9k
3
votes
12
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473
views
4
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12
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11
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1 day ago by
Ram
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21 days ago by
emilydolivo97
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10
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Popular Question to
yueli7
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Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
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Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: Removing duplicates
by
joe
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500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
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swbarnes2
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No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
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Ram
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Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
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Ram
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It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
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Ram
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I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
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This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
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GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
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GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
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