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208 results • Page
2 of 5
Sort: replies
Rank
Views
Votes
Replies
1
vote
5
replies
259
views
Enrichment of mitochondrial and ribosomal pathways - an artifact?
Pathway
Mitochondria
Ribosome
scRNA-seq
Enrichment
15 hours ago by
omer.shomrat
• 0
1
vote
5
replies
667
views
Mugsy percentage of identity
Mugsy
Genome-alignment
updated 5 days ago by
Ram
40k • written 2.5 years ago by
A_heath
▴ 140
0
votes
5
replies
433
views
genome data downloads for various strains
gisaid
hass-marr
updated 1 day ago by
Ram
40k • written 5 days ago by
iftikharmaryam123
• 0
2
votes
5
replies
279
views
How to change from gene_id to GeneID/EntrezID using R
identifiers
Deseq2
GeneID
updated 1 day ago by
Kevin Blighe
86k • written 3 days ago by
Nicolas
• 0
1
vote
5
replies
168
views
bcftools error merging two VCFs: REF prefixes differ
bcftools
VCF
8 hours ago by
Shane
• 0
2
votes
5
replies
228
views
obtaining circular RNAs' sequences from circBase
circular-RNA
updated 21 hours ago by
Barry Digby
★ 1.2k • written 1 day ago by
aminijavad4
▴ 10
2
votes
5
replies
1.8k
views
How to make alpha diversity boxplot?
alpha_diversity
taxa
ASV
box_plot
shannon
updated 1 day ago by
yeah
• 0 • written 10 months ago by
Amr
▴ 140
1
vote
5
replies
352
views
ATAC-seq troubleshoot - Just Noise
ATAC-seq
updated 23 hours ago by
ATpoint
76k • written 5 days ago by
vk
▴ 40
2
votes
5
replies
334
views
Trimmomatic .jar not included anymore?
trimmomatic
ubuntu
linux
updated 4 days ago by
petebio
▴ 100 • written 4 days ago by
Emily
▴ 30
2
votes
5
replies
195
views
How the first sequencing template removed in pair end sequencing
NGS
RNA-seq
WGS
sequence
13 hours ago by
octpus616
▴ 90
8
votes
5
replies
1.6k
views
BLASTp command line : filtering results by a minimum % of identity and % coverage
BLASTp
updated 5 days ago by
Ram
40k • written 24 months ago by
A_heath
▴ 140
0
votes
5
replies
356
views
manhattan plot with vcf information
R
manhattan
vcf
updated 5 days ago by
dthorbur
▴ 550 • written 7 days ago by
sooni
▴ 10
2
votes
5
replies
453
views
Uniprot Database for download
proteomics
Uniprot
updated 5 days ago by
Elisabeth Gasteiger
★ 2.3k • written 4 weeks ago by
SHN
▴ 40
2
votes
5
replies
328
views
How to check RNAseq support for annotated genes?
gene
RNA-seq
annotation
updated 8 hours ago by
Michael
53k • written 4 days ago by
BioinfoBee
• 0
6
votes
4
replies
1.2k
views
How to sort blast results by a minimum % of identical matches?
blast
updated 5 days ago by
Ram
40k • written 2.9 years ago by
A_heath
▴ 140
2
votes
4
replies
245
views
Integrated Seurat object change name of the two conditions
R
integrated
Seurat
1 day ago by
camillab.
▴ 130
3
votes
4
replies
276
views
Dotplot : how to self-define the range of legend
analysis
seq
RNA
updated 1 day ago by
GenoMax
134k • written 3 days ago by
Xuhao
• 0
11
votes
4
replies
908
views
How to determine % similarity between genomes?
mauve
mugsy
genome-alignment
updated 5 days ago by
Ram
40k • written 2.5 years ago by
A_heath
▴ 140
0
votes
4
replies
714
views
Is there a way to get a list of all homogygous sites for each sample with plink (regardless if they are in a run)
plink
updated 2 days ago by
chrchang523
10k • written 17 days ago by
curious
▴ 730
3
votes
4
replies
179
views
Unable to build applet in DNAnexus, .jar file not found
dnanexus
applet
updated 1 day ago by
LChart
3.4k • written 1 day ago by
_quantum_girl_
▴ 10
0
votes
4
replies
318
views
Hugo_Symbol to Entrez ID
hugo
bioinformatics
entrez
ids
symbols
updated 2 days ago by
Kevin Blighe
86k • written 4 days ago by
shakyaram079
• 0
7
votes
4
replies
1.9k
views
Structural variant breakend
structural-variant
updated 5 days ago by
Ram
40k • written 2.1 years ago by
A_heath
▴ 140
2
votes
4
replies
805
views
gosling.js and React 1.7+
react
gosling
updated 4 days ago by
Ram
40k • written 13 months ago by
Bin
▴ 10
1
vote
4
replies
140
views
Running Rockhopper from a command-line
rockhopper
java
10 minutes ago by
langziv
▴ 50
1
vote
4
replies
306
views
I need to retrieve a set of protein and mRNA sequences
Protein
mRNA
sequences
updated 6 days ago by
Ram
40k • written 6 days ago by
george
• 0
9
votes
4
replies
1.1k
views
Illumina Q score
Illumina
quality-score
updated 5 days ago by
Ram
40k • written 2.0 years ago by
A_heath
▴ 140
1
vote
4
replies
226
views
geom_signif() uses t-test to compare between more than 3 groups... Isn't this wrong?
ggplot2
ANOVA
t-test
20 hours ago by
RM123
▴ 10
8
votes
4
replies
787
views
BLASTn: extract unmatched regions only
BLASTn
updated 5 days ago by
Ram
40k • written 22 months ago by
A_heath
▴ 140
0
votes
4
replies
165
views
Comparing multiple columns from two files using AWK
awk
updated 12 hours ago by
Ram
40k • written 12 hours ago by
emiliomastriani
▴ 30
2
votes
4
replies
314
views
Refseq annotation | Populus trichocarpa
R
RNA-seq
plants
Refseq
updated 6 days ago by
Ram
40k • written 6 days ago by
P
• 0
3
votes
4
replies
389
views
Chromosome bias on RNA-Seq differential gene expression analysis
chromosome-bias
RNA-seq
4 days ago by
blz
▴ 30
2
votes
4
replies
279
views
Using STAR aligner to build index of hg38
hg38
STAR
alignment
RNAseq
index
3 days ago by
Grace
• 0
2
votes
4
replies
333
views
Ties in reranked list
fgsea
GSEA
3 days ago by
Hamza
• 0
4
votes
4
replies
416
views
DESeq2 analysis using two featureCounts generated from different studies
RNA-seq
DESeq2
5 days ago by
abedkurdi10
▴ 190
1
vote
4
replies
335
views
Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempting To Use CuffDiff
CuffDiff
Bash
Cufflinks
3 days ago by
Y
• 0
0
votes
4
replies
158
views
BED files
BED
NGS
Chromosomes
updated 13 hours ago by
Ram
40k • written 22 hours ago by
adarsh_pp
▴ 30
4
votes
4
replies
346
views
Filtering VCF to divide with equal sizes
bcftools
vcf
updated 5 days ago by
Ram
40k • written 5 days ago by
avelarbio46
▴ 30
0
votes
4
replies
425
views
Weirdness in annotation (missing allele frequencies)
allele-frequency
gnomad
annovar
updated 3 days ago by
Jeremy Leipzig
21k • written 4 days ago by
Can Abdullah
• 0
1
vote
4
replies
236
views
How to sort cd-hit-est cluster file
sort
cd-hit-est
1 day ago by
Mo
▴ 40
4
votes
4
replies
2.9k
views
How to keep the top hits only in the output file of hmmscan?
hmmer
hmmscan
updated 5 days ago by
Ram
40k • written 3.1 years ago by
A_heath
▴ 140
5
votes
4
replies
560
views
How to correct a wrong protein extraction from FASTA file?
fasta
bash
updated 5 days ago by
Ram
40k • written 3.1 years ago by
A_heath
▴ 140
6
votes
4
replies
751
views
How to rename file titles that contain underscores?
shell
bash
updated 5 days ago by
Ram
40k • written 3.1 years ago by
A_heath
▴ 140
9
votes
4
replies
1.2k
views
How to extend contigs from single-end reads?
contigs
contig-extension
updated 5 days ago by
Ram
40k • written 3.0 years ago by
A_heath
▴ 140
1
vote
3
replies
673
views
How to determine plasmid or chromosomal origin?
plasmid
chromosomal-origin
updated 5 days ago by
Ram
40k • written 3.0 years ago by
A_heath
▴ 140
0
votes
3
replies
186
views
Saving the output of LD pruning from SNPRelate package as a new GDS file
LD-pruning
SNPRelate
updated 14 hours ago by
James W. MacDonald
▴ 20 • written 1 day ago by
Patrick
• 0
0
votes
3
replies
1.3k
views
how to calculate BAF and LRR from VCF or BCF files?
SNP
BAF
LRR
Variation
5 days ago by
xiaoguang
▴ 130
2
votes
3
replies
600
views
How to change standard genetic code in Artemis?
Mycosplasma
Artemis
updated 5 days ago by
Ram
40k • written 2.8 years ago by
A_heath
▴ 140
1
vote
3
replies
373
views
I have performed Trimmomatic run for adapter removal. QC report shows drop in the reads and presence of overrepresented sequences. Seeking help!
NGS
bioinformatics
illumina
WGS
updated 1 day ago by
swbarnes2
13k • written 2 days ago by
Vijith
▴ 30
0
votes
3
replies
730
views
How to add translation of CDS in Artemis?
translation
Artemis
updated 5 days ago by
Ram
40k • written 2.7 years ago by
A_heath
▴ 140
7
votes
3
replies
713
views
blastn with short sequences gives no results in the corresponding genome
primers
blastn
updated 5 days ago by
Ram
40k • written 2.7 years ago by
A_heath
▴ 140
208 results • Page
2 of 5
Recent Votes
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I managed to resolve the issue by passing absolute paths instead of relative ones.
Comment: Which function is best for pathway analysis?
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