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64 results • Page
1 of 2
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Views
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50
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30
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10k
views
8 follow
How to get sample names and genotype for SNP in multi-sample VCF file
SNP
genotype
GATK
updated 19 hours ago by
AMARU
• 0 • written 5.1 years ago by
hellbio
▴ 490
79
votes
34
replies
7.7k
views
15 follow
Forum:
Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship
career
updated 15 hours ago by
Ram
38k • written 7.4 years ago by
sentausa
▴ 650
4
votes
8
replies
6.4k
views
SNPs located in promoter region. OR exon, intron, 5'UTR, 3'UTR
SNP
updated 14 hours ago by
Ram
38k • written 7.3 years ago by
wanghaho9797
• 0
31
votes
34
replies
5.7k
views
11 follow
Forum:
pros- and cons- : programming skills vs. GUI
programming
lecture
updated 14 hours ago by
Ram
38k • written 7.3 years ago by
TriS
★ 4.6k
3
votes
4
replies
4.8k
views
How to visualize sequence quality control distribution
sequence
Fastq
R
updated 14 hours ago by
Ram
38k • written 7.4 years ago by
faizlotfy
▴ 30
1
vote
1
reply
4.2k
views
How to Determine the Most Conserved Sequence from BLAST Result?
blast
sequence-alignment
updated 14 hours ago by
Ram
38k • written 7.4 years ago by
Bahrani
▴ 30
0
votes
2
replies
3.4k
views
Interproscan nucleotide sequence scanning
software-error
sequence
updated 16 hours ago by
Ram
38k • written 7.4 years ago by
waqasnayab
▴ 230
20
votes
7
replies
3.1k
views
Forum:
Change career path
education
career
updated 17 hours ago by
Ram
38k • written 7.4 years ago by
witold.tatkiewicz
▴ 40
3
votes
9
replies
2.9k
views
Need recommendation for a virtual machine or linux cluster for ngs analysis
ngs
updated 14 hours ago by
Ram
38k • written 7.4 years ago by
bioguy24
▴ 220
7
votes
4
replies
2.7k
views
Why Chip-seq data cross correlation plot has fragment_lenth cross correlation peak and read-length peaks
chip-seq
quality-control
cross correlation
updated 15 hours ago by
Daniel
• 0 • written 3.8 years ago by
harrypotterandsbt
▴ 110
10
votes
5
replies
2.6k
views
Biopython or Bioperl help
next-gen
RNA-Seq
biopython
sequence
updated 19 hours ago by
Ram
38k • written 7.4 years ago by
iamtuttu5
▴ 40
1
vote
7
replies
2.4k
views
Forum:
Bioinformatics & Virology or Immunology.
immunology
virology
updated 14 hours ago by
Ram
38k • written 7.4 years ago by
jmt89.lp
• 0
5
votes
4
replies
2.2k
views
strand specificity of TFBS
motif
transcription-factor
TFBS
updated 17 hours ago by
Ram
38k • written 7.4 years ago by
Chris Gene
▴ 80
6
votes
5
replies
2.1k
views
Forum:
Bioinformatics course good for microbiology student or not?
career
updated 14 hours ago by
Ram
38k • written 7.3 years ago by
cheeesu
▴ 10
0
votes
0
replies
2.1k
views
Job:
Director of Bioinformatics Products (Bozeman MT)
next-generation-sequencing
clinical-informatics
updated 19 hours ago by
Ram
38k • written 7.4 years ago by
Golden Helix Inc
• 0
4
votes
4
replies
2.1k
views
What protein structure do human proteins refer to?
protein
protein-structure
updated 17 hours ago by
Ram
38k • written 7.4 years ago by
jcrapser
▴ 10
1
vote
0
replies
2.0k
views
Job:
Applications Architect - Children's Hospital Los Angeles
NGS
Exome
Personalized-Medicine
NoSQL
updated 19 hours ago by
Ram
38k • written 7.4 years ago by
xiaowugai
▴ 10
0
votes
4
replies
2.0k
views
Please could someone explain multiple sequence aligning?
alignment
sequence
updated 19 hours ago by
Ram
38k • written 7.4 years ago by
Harry69Berry
• 0
0
votes
0
replies
1.9k
views
Job:
PhD Studentships @ University of Glasgow [International students can also apply]
phd
updated 14 hours ago by
Ram
38k • written 7.3 years ago by
umer.zeeshan.ijaz
★ 1.8k
8
votes
4
replies
1.7k
views
Forum:
Tutorials for families of cancer patients
diagnosis
cancer
updated 17 hours ago by
Ram
38k • written 7.4 years ago by
gregory.louie
▴ 70
1
vote
6
replies
1.7k
views
Data Retrival from GenBank
NCBI
updated 19 hours ago by
Ram
38k • written 7.4 years ago by
katherinebridges99
• 0
0
votes
2
replies
1.6k
views
Forum:
Data Vizualization or Pathway Analysis
next-gen
RNA-Seq
updated 17 hours ago by
Ram
38k • written 7.4 years ago by
quevedo.marisa
• 0
1
vote
3
replies
1.5k
views
How to get aligned protein data from DNA sequences.
protein
alignment
DNA
updated 14 hours ago by
Ram
38k • written 7.4 years ago by
samar.bt
• 0
5
votes
8
replies
1.5k
views
DiffBind missing peaks and FRiP
DiffBind
ChIP-seq
updated 22 hours ago by
Rory Stark
★ 1.7k • written 13 months ago by
Christine
▴ 20
2
votes
0
replies
1.5k
views
Job:
Bioinformatics Specialist at the Center for Personalized Diagnostics, University of Pennsylvania, USA
bioinformatician
updated 19 hours ago by
Ram
38k • written 7.4 years ago by
faryabipenn
▴ 30
2
votes
1
reply
1.4k
views
ensemble illumina tissues aligned rnaSeq
alignment
RNA-Seq
gene
ISOFORM
updated 14 hours ago by
Ram
38k • written 7.4 years ago by
fk566938
▴ 10
0
votes
1
reply
1.4k
views
TMREC(Transcription factor and miRNA regulatory cascade in human diseases) database
transcription-factors
database
updated 15 hours ago by
Ram
38k • written 7.4 years ago by
mscbioinfo2014
• 0
0
votes
0
replies
1.4k
views
Job:
130K+ San Francisco - Sr (PhD) Biostatistician
biostatistics
updated 17 hours ago by
Ram
38k • written 7.4 years ago by
dannyziajoseph
▴ 10
0
votes
0
replies
1.3k
views
Job:
PhD Studentship in bioinformatics
next-gen
RNA-Seq
updated 14 hours ago by
Ram
38k • written 7.3 years ago by
david.swarbreck
• 0
0
votes
0
replies
1.0k
views
Getting started with miRNA prediction
miRNA
updated 19 hours ago by
Ram
38k • written 7.4 years ago by
Nuria_bl
▴ 10
2
votes
2
replies
1.0k
views
Forum:
Tag autocompletion doesn't show all tags
meta
biostars
updated 19 hours ago by
Ram
38k • written 7.4 years ago by
Michael D
52k
0
votes
3
replies
821
views
Problem to convert genotypes to plink format from bcftools
vcf
bcftools
ped
plink
beagle
updated 22 hours ago by
Manuel Ramón
▴ 10 • written 22 months ago by
Alejandro
▴ 10
1
vote
7
replies
478
views
Dependent p values
pvalue
snp
Gene
1 hour ago by
Eliza
▴ 20
1
vote
4
replies
363
views
SKAT in R
pvalue
skat
snp
18 minutes ago by
Eliza
▴ 20
0
votes
7
replies
328
views
syntax errors when running part3 all-against-all
oma
updated 19 hours ago by
Ram
38k • written 3 days ago by
Sofia
• 0
1
vote
4
replies
311
views
Snakemake doesn't recognize output files even though they are created
python
Snakemake
12 hours ago by
DdogBoss
• 0
3
votes
7
replies
294
views
Diffbind dba.count doesn't give FRiP score
Diffbind
FRiP
updated 20 hours ago by
Rory Stark
★ 1.7k • written 1 day ago by
gyspace
• 0
0
votes
2
replies
288
views
LDSC correlation calculate confidence intervals
correlation
intervals
confidence
genetic
LDSC
12 hours ago by
YL
▴ 10
3
votes
3
replies
227
views
PTM-aware protein folding / docking
docking
protein-structure
folding
updated 16 hours ago by
Mensur Dlakic
★ 23k • written 2 days ago by
LChart
2.2k
3
votes
7
replies
220
views
What is the major problem with this pipeline of SNPs analysis?
Genomics
Fungi
SNP
VCF
updated 17 hours ago by
Ram
38k • written 20 hours ago by
kgwkk2
• 0
0
votes
1
reply
193
views
how can we improve genome assembly levels ? from contig to complete using bioinformatics pipelines?
contig
genome
pipelines
assembly
updated 21 hours ago by
colindaven
4.6k • written 4 days ago by
vasudhapai
• 0
0
votes
3
replies
181
views
How to deal with the probe id mapping to multiple gene ids?
match
microarray
affymetrix
probe
gene
6 hours ago by
dare_devil
★ 1.7k
2
votes
2
replies
166
views
Snakemake workflow for trimmomatic
snakemake
1 hour ago by
antoine.fauchois92
• 0
0
votes
1
reply
154
views
Difference between sratools and sratoolkit
sratools
fastq
sequencing
sratoolkit
sra
updated 22 hours ago by
GenoMax
127k • written 1 day ago by
hamarillo
▴ 10
0
votes
1
reply
146
views
How to run prepDE.py3?
prepDE.py3
stringtie
updated 22 hours ago by
Barry Digby
★ 1.1k • written 1 day ago by
SH
• 0
0
votes
2
replies
143
views
Gene duplicate
monocle3
updated 14 hours ago by
ATpoint
71k • written 14 hours ago by
alghezim1
• 0
4
votes
2
replies
143
views
Getting Intron Positions from Amino Acid Sequences
acid
positions
amino
sequences
intron
18 hours ago by
fafad046
• 0
2
votes
2
replies
140
views
How to remove duplicate reads after ONT basecalling from fastq.gz files
fastq
15 hours ago by
Darrenjdd
• 0
0
votes
1
reply
139
views
SKAT iniciation
SKAT
updated 23 hours ago by
barslmn
★ 1.4k • written 1 day ago by
Ed
• 0
0
votes
1
reply
136
views
R package for functional enrichment and depletion analysis
enrichment
depletion
updated 14 hours ago by
rpolicastro
11k • written 18 hours ago by
lessismore
★ 1.3k
64 results • Page
1 of 2
Recent Votes
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
SSPACE for scaffolding
Answer: Snakemake workflow for trimmomatic
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
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GenoMax
127k
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Mensur Dlakic
★ 23k
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Pierre Lindenbaum
153k
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lessismore
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Recent Replies
Comment: SKAT in R
by
Eliza
▴ 20
@acvill can you sujjest maybe pther tools , methods for this ? ( also for every SNP i have data how many patients had the hetro/homozygous…
Comment: TCGA-BRCA tissue and RNAseq problem
by
pinheirofabiano
▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Answer: Snakemake workflow for trimmomatic
by
antoine.fauchois92
• 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values
by
Eliza
▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
GenoMax
127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
by
rpolicastro
11k
`Org.Mm.eg.db` is the mouse organism database, but your ENSEMBL IDs are for human genes. Mouse ensembl ids start with `ENSMUSG`. You proba…
Comment: Snakemake doesn't recognize output files even though they are created
by
DdogBoss
• 0
Yes, it completed the dry run. What other information do you need?
Comment: LDSC correlation calculate confidence intervals
by
YL
▴ 10
Based on my personal thought, I think the se from LDSC output probably needs to be transferred using Delta method based on Fisher transform…
Comment: LDSC correlation calculate confidence intervals
by
YL
▴ 10
Hi, Are you able to find an answer for this? I have the exact question! YL
Answer: Gene duplicate
by
ATpoint
71k
Use use ensembID_geneName as gene identifier to avoid that. These duplicate names exist as genes so removing them is somewhat not really da…
Comment: Gene duplicate
by
Ram
38k
> some Ensembl IDs that are the same Please show us some examples.
Comment: R package for functional enrichment and depletion analysis
by
rpolicastro
11k
What you're describing is a simulation of the hypergeometric test, so if you want an exact solution you could use the function `fora` from …
Comment: How to remove duplicate reads after ONT basecalling from fastq.gz files
by
Darrenjdd
• 0
Perfect! Thank you!
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