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36
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Ram
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Pierre Lindenbaum
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9
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10
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49
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28
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25k
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updated 2 days ago by
Ram
38k
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Varun Gupta
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1.2k
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22k
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6 follow
138
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42
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updated 2 days ago by
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2.5k
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written 9.8 years ago by
Whetting
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11
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18k
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8
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updated 5 days ago by
Ram
38k
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written 3.7 years ago by
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670
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10
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updated 2 days ago by
Kevin Blighe
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40
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updated 2 days ago by
Ram
38k
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written 10.2 years ago by
lsvijfhuizen
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90
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updated 2 days ago by
Ram
38k
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written 10.4 years ago by
veronicaschroeder78
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140
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4
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58
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23
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12k
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11 follow
updated 6 days ago by
Ram
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Phil Ewels
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1.1k
16
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10
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12k
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6 follow
updated 5 days ago by
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38k
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mariusorion
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60
16
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5
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520
21
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12
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4
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9
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6
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70
0
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Do you have a public facing github page (or equivalent) that provides examples of bioinformatics workflows you've created?
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Hi Ming
Untrimmed reads have 76bp in average.
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bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
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I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
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Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made.
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To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example:
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The following is the correct code
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