20 hours ago by
Kevin Blighe
87k
76
votes
72
replies
19k
views
19 follow
34
votes
16
replies
20k
views
9 follow
updated 6 days ago by
Hagen
▴
10
•
written 10.2 years ago by
filipzembol
▴
180
3
votes
13
replies
644
views
5
votes
13
replies
1.1k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
updated 5 days ago by
ATpoint
82k
•
written 6 days ago by
BioinfGuru
★
1.7k
0
votes
13
replies
3.5k
views
6 follow
updated 1 day ago by
drstalinantony28
•
0
•
written 2.2 years ago by
ymj
▴
10
4
votes
11
replies
496
views
25
votes
11
replies
3.7k
views
6 follow
Forum:
Site Use Guidelines
updated 2 days ago by
Ram
43k
•
written 14.6 years ago by
Istvan Albert
100k
0
votes
10
replies
400
views
1
vote
10
replies
886
views
1 day ago by
DKA
▴
40
4
votes
9
replies
2.6k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
written 8.2 years ago by
dvelmeshev
•
0
2
votes
9
replies
814
views
3
votes
9
replies
407
views
updated 1 day ago by
Istvan Albert
100k
•
written 3 days ago by
Κοσμάς
•
0
3
votes
8
replies
465
views
0
votes
8
replies
295
views
1
vote
8
replies
736
views
updated 14 hours ago by
Pierre Lindenbaum
161k
•
written 7 days ago by
Maria
•
0
3
votes
8
replies
1.2k
views
4
votes
7
replies
391
views
7
votes
7
replies
5.9k
views
6 follow
updated 5 hours ago by
rohitsatyam102
▴
850
•
written 6.1 years ago by
smallfish
▴
10
2
votes
7
replies
812
views
updated 6 days ago by
joe
▴
510
•
written 8 days ago by
quentinperriere
•
0
2
votes
7
replies
5.2k
views
6 follow
updated 6 days ago by
ATpoint
82k
•
written 7.2 years ago by
boymin2020
▴
80
3
votes
6
replies
641
views
7
votes
6
replies
460
views
4 days ago by
analyst
▴
30
0
votes
6
replies
293
views
2
votes
6
replies
3.6k
views
updated 2 hours ago by
ATpoint
82k
•
written 3.9 years ago by
grayapply2009
▴
280
0
votes
6
replies
424
views
1
vote
5
replies
694
views
updated 6 days ago by
BioinfGuru
★
1.7k
•
written 7 days ago by
rrehimi
•
0
2
votes
5
replies
10k
views
1
vote
5
replies
555
views
8
votes
5
replies
5.1k
views
3
votes
5
replies
252
views
updated 3 days ago by
GenoMax
141k
•
written 3 days ago by
ahmad.sajad4541
•
0
2
votes
5
replies
443
views
0
votes
5
replies
281
views
1
vote
5
replies
587
views
updated 2 days ago by
atowns21
•
0
•
written 3 months ago by
benjamin.pyenson
•
0
2
votes
5
replies
516
views
updated 4 days ago by
Mensur Dlakic
★
27k
•
written 5 days ago by
Giorgio
•
0
1
vote
5
replies
253
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
marco.barr
▴
80
2
votes
5
replies
681
views
0
votes
5
replies
263
views
updated 8 hours ago by
GenoMax
141k
•
written 1 day ago by
Bertalan_Takacs
▴
90
0
votes
5
replies
5.9k
views
updated 5 days ago by
ndm1096
•
0
•
written 6.5 years ago by
ac.research
▴
30
3
votes
5
replies
538
views
1
vote
5
replies
308
views
2 days ago by
anasjamshed
▴
120
3
votes
4
replies
651
views
0
votes
4
replies
237
views
13 hours ago by
sehriban.buyukkilic
▴
10
0
votes
4
replies
575
views
0
votes
4
replies
2.6k
views
updated 20 hours ago by
evawillms183
•
0
•
written 8.3 years ago by
andrepleao
•
0
0
votes
4
replies
277
views
2
votes
4
replies
2.3k
views
updated 18 hours ago by
ZhangYuanfeng
•
0
•
written 2.4 years ago by
Frazier Baker
•
0
2
votes
4
replies
242
views
5
votes
4
replies
620
views
1 day ago by
kirillkirilenko
▴
40
0
votes
4
replies
518
views
1
vote
4
replies
408
views
Recent Votes
Recent Locations •
All
Israel, 1 minute ago
France, 2 minutes ago
United Kingdom, 7 minutes ago
United States, 8 minutes ago
United Kingdom, 10 minutes ago
United States, 11 minutes ago
Czech Republic, 13 minutes ago
Recent Awards •
All
Popular Question to
zdiazmar
▴
30
Popular Question to
hkarakurt
▴
180
Student to
John Torcivia
▴
70
Popular Question to
bioinfo
▴
150
Popular Question to
jvijai
★
1.2k
Recent Replies
Answer: Sequence read length shorter than flow cell specification
by
swbarnes2
14k
The company probably had you share your run with someone who needed the extra bases.
So you get the extra bases free. Just use them unle…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
Comment: Annovar using R package
by
DKA
▴
40
Thank you for your guidance. The thing is that I am unfamiliar with using such environments, unfortunately.
Comment: Treatment VS Control in Single Cell RNAseq analysis
by
ATpoint
82k
Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
by
ATpoint
82k
I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Treatment VS Control in Single Cell RNAseq analysis
by
kilcdincer
▴
10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis?
Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases
by
GenoMax
141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST
If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases
by
5heikki
11k
This has been discussed [many times][1]
[1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work?
by
Bioinfotec
▴
10
I think when you give indent to seuObj :
```r
Idents(seuObj) <- 'RNA_snn_res.0.1'
```
You may wrongly assign other value to it such as `…
Answer: ScRNAseq-How to correctly choose cell type marker genes
by
Bioinfotec
▴
10
In fact, there is no gold standard for cell type annotation. To achieve correct cell type classification, you can combine the two methos. F…
Answer: ScRNA data question
by
Bioinfotec
▴
10
In violin plot, a dot represents a cell. Actually, the straight lines you see in your infected image just means these cells have the same e…
Comment: Sequence read length shorter than flow cell specification
by
GenoMax
141k
> the have sent data with different sequencing read lengths: 55bp pair ended and 80bp single ended
If they sent data that is not what you…
Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing
by
rohitsatyam102
▴
850
I have some off-the-chart dN/dS values for few genes (>20) when using your script on VCF obtained from a 20K plasmodium genomes (pf7K).
| …
Answer: Sequence read length shorter than flow cell specification
by
ATpoint
82k
It is the amount of reagent in the kit that determines read length. Sometimes index cycle reagents are allocated to R1/R2 or they used anot…
Traffic: 2750 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6