updated 24 months ago by
Raony Guimarães
★
1.4k
•
written 14.1 years ago by
Jeremy Leipzig
23k
1.2k
votes
206
replies
78k
views
108 follow
837
votes
170
replies
177k
views
112 follow
updated 26 days ago by
Biostar
3.6k
•
written 8.5 years ago by
Istvan Albert
102k
367
votes
82
replies
152k
views
35 follow
365
votes
58
replies
79k
views
44 follow
updated 19 months ago by
Ram
45k
•
written 15.2 years ago by
Istvan Albert
102k
349
votes
94
replies
261k
views
59 follow
328
votes
54
replies
71k
views
45 follow
310
votes
33
replies
126k
views
26 follow
updated 8 months ago by
tshtatland
▴
190
•
written 11.6 years ago by
Obi Griffith
20k
307
votes
65
replies
26k
views
48 follow
14.6 years ago by
Giovanni M Dall'Olio
28k
304
votes
27
replies
49k
views
33 follow
updated 2.8 years ago by
Ram
45k
•
written 9.3 years ago by
CandiceChuDVM
★
2.5k
299
votes
123
replies
43k
views
29 follow
293
votes
40
replies
197k
views
30 follow
updated 7 months ago by
geocarvalho
▴
400
•
written 10.7 years ago by
Obi Griffith
20k
290
votes
55
replies
19k
views
41 follow
286
votes
64
replies
24k
views
44 follow
Forum:
Bioinformatics "Cheat Sheet"
updated 2.7 years ago by
Kevin Blighe
89k
•
written 14.2 years ago by
Chris Miller
22k
283
votes
29
replies
307k
views
25 follow
updated 2.5 years ago by
Ram
45k
•
written 12.6 years ago by
sohadb1357
▴
640
279
votes
69
replies
24k
views
23 follow
262
votes
48
replies
26k
views
37 follow
updated 2.2 years ago by
Lars
★
1.1k
•
written 10.0 years ago by
Deepak Tanwar
★
4.2k
252
votes
36
replies
37k
views
27 follow
updated 2.2 years ago by
Ram
45k
•
written 15.1 years ago by
Pierre Lindenbaum
166k
244
votes
36
replies
12k
views
32 follow
updated 2.1 years ago by
Ram
45k
•
written 9.1 years ago by
Shicheng Guo
★
9.6k
242
votes
176
replies
109k
views
73 follow
237
votes
45
replies
76k
views
34 follow
231
votes
38
replies
157k
views
29 follow
updated 23 months ago by
Ram
45k
•
written 12.2 years ago by
Malachi Griffith
20k
227
votes
39
replies
293k
views
33 follow
211
votes
21
replies
201k
views
12 follow
updated 2.5 years ago by
Istvan Albert
102k
•
written 14.5 years ago by
Andrea_Bio
★
2.9k
206
votes
58
replies
44k
views
31 follow
203
votes
41
replies
28k
views
20 follow
198
votes
27
replies
38k
views
20 follow
Forum:
Bioinformatics Cartoon
updated 22 months ago by
Ram
45k
•
written 13.4 years ago by
Maxime Lamontagne
★
2.4k
198
votes
46
replies
76k
views
34 follow
updated 9 weeks ago by
Riley J
•
0
•
written 12.7 years ago by
Obi Griffith
20k
198
votes
46
replies
22k
views
26 follow
18 months ago by
Istvan Albert
102k
188
votes
47
replies
5.2k
views
16 follow
updated 2.1 years ago by
Ram
45k
•
written 9.1 years ago by
Bioinfexperts
▴
190
188
votes
50
replies
79k
views
41 follow
updated 2.7 years ago by
Ram
45k
•
written 14.6 years ago by
Zhangleisdau
▴
340
185
votes
44
replies
88k
views
30 follow
185
votes
45
replies
35k
views
27 follow
updated 19 months ago by
Ram
45k
•
written 15.2 years ago by
Giovanni M Dall'Olio
28k
179
votes
51
replies
19k
views
26 follow
updated 11.8 years ago by
sarahhunter
▴
600
•
written 14.6 years ago by
Pierre Lindenbaum
166k
176
votes
30
replies
97k
views
17 follow
172
votes
41
replies
107k
views
27 follow
172
votes
34
replies
29k
views
29 follow
171
votes
26
replies
9.6k
views
12 follow
updated 2.3 years ago by
Ram
45k
•
written 14.2 years ago by
Andra Waagmeester
3.2k
169
votes
8
replies
202k
views
updated 2.9 years ago by
Ram
45k
•
written 12.4 years ago by
lyz10302012
▴
480
169
votes
52
replies
142k
views
28 follow
165
votes
64
replies
99k
views
39 follow
164
votes
71
replies
67k
views
36 follow
163
votes
22
replies
19k
views
19 follow
162
votes
24
replies
67k
views
19 follow
updated 23 months ago by
Ram
45k
•
written 12.2 years ago by
Nicolas Rosewick
11k
160
votes
19
replies
44k
views
16 follow
156
votes
13
replies
31k
views
155
votes
44
replies
35k
views
29 follow
updated 2.9 years ago by
Ram
45k
•
written 11.3 years ago by
Carlos Borroto
★
2.1k
155
votes
17
replies
34k
views
13 follow
updated 2.9 years ago by
Ram
45k
•
written 13.4 years ago by
Sean Davis
27k
153
votes
27
replies
12k
views
21 follow
updated 14.4 years ago by
k.nirmalraman
★
1.1k
•
written 14.4 years ago by
Giovanni M Dall'Olio
28k
153
votes
32
replies
11k
views
23 follow
updated 13.3 years ago by
Palani Kannan
▴
60
•
written 13.8 years ago by
Travis
★
2.9k
152
votes
42
replies
186k
views
22 follow
updated 3.0 years ago by
Ram
45k
•
written 13.2 years ago by
Obi Griffith
20k
Recent Votes
Recent Locations •
All
UCLA, 2 minutes ago
Japan, 2 minutes ago
Slovakia, 3 minutes ago
China, 9 minutes ago
France, 23 minutes ago
Berlin, 38 minutes ago
India, 1 hour ago
Recent Awards •
All
Popular Question to
Pierre Lindenbaum
166k
Popular Question to
Picasa
▴
680
Popular Question to
Joel Wallenius
▴
220
Popular Question to
abedkurdi10
▴
190
Popular Question to
zhang616123
•
0
Popular Question to
María José
▴
10
Recent Replies
Answer: Issue in circular heatmap, the rows value are getting interchanged.
by
Bastien Hervé
6.3k
Open an issue [here][1]
In [circos.heatmap][2] vignette, on the first heatmap, you can guess the row R71 in the block "a". With C10/C9 as …
Comment: How to input INDELs in ped files
by
Mwangana
•
0
@Ant, I have the same issue. Did you successfully resolve it?
Comment: terminal can't activate base automatically (conda)
by
tllee
•
0
I ran into the same problem recently. I tried:
conda config --set auto_activate_base true
Then I checked the `~/.condarc` file. After…
Comment: How to perform Linkage Disequilibrium (LD) analysis in INDELS
by
Mwangana
•
0
@Ant, you can can convert your data into a VCF file by using VCF-Simplify https://github.com/everestial/VCF-Simplify
Comment: How to perform Linkage Disequilibrium (LD) analysis in INDELS
by
Mwangana
•
0
@dthorbur, I have the same issue. Fortunately my data is in a VCF file. Can you please guide me by outlining the steps how to carryout the …
Comment: RNAseq meta-analysis to identify “consistently expressed” genes
by
rfran010
★
1.5k
Just adding on, the problem really is that you cannot say if a gene is not expressed just because it's not detected.
I think your approach …
Comment: Bulk RNA-seq differential gene expression analysis on haplotype‑resolved diploid
by
rfran010
★
1.5k
Also, an alternative method would be to quantify gene expression independently of haplotypes and just quantify variant percentage of the ge…
Comment: Bulk RNA-seq differential gene expression analysis on haplotype‑resolved diploid
by
rfran010
★
1.5k
Yes, I don't think it's too common, but it should fit easily into isoform/allele-aware quantification workflows, no?
Comment: STAR alignment not detecting some transcripts / custom reference
by
rfran010
★
1.5k
> To debug the source of the problem, I manually aligned my fastq files
> to a fasta file containing just the dcm gene using bwa. This repo…
Comment: STAR alignment not detecting some transcripts / custom reference
by
GenoMax
151k
What is this gene supposed to do? Is it being integrated in zebrafish genome and then expected to be expressed?
Are there other genes in …
Comment: How to preserve full FASTQ header through alignment and CRAM recovery
by
GenoMax
151k
> I delete FASTQ files after alignment to save space
Are you never going to need to submit this data to a resource like SRA? Or do you ha…
Comment: How to preserve full FASTQ header through alignment and CRAM recovery
by
GenoMax
151k
> This seems hacky though
Then you can use `reformat.sh` from BBMap suite with option `underscore=t` to convert white space in read names …
Comment: How to preserve full FASTQ header through alignment and CRAM recovery
by
Pierre Lindenbaum
166k
the only tool I know which uses this information is Markduplicate but you can always set a regex to set the fields: https://gatk.broadinsti…
Comment: How to preserve full FASTQ header through alignment and CRAM recovery
by
curious
▴
880
Thanks. Do people just not worry about keeping individual read barcodes with the alignment? ~97% of my barcodes in the fastq file are ident…
Comment: error in the output of bedops
by
Alex Reynolds
36k
https://github.com/bedops/bedops/issues/287#issuecomment-2904811765
Traffic: 1935 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6