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13,510 results • Page
3 of 271
Sort: Votes
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Views
Votes
Replies
56
votes
52
replies
50k
views
12 follow
Tool:
Gene Set Clustering based on Functional annotation (GeneSCF)
geneSCF
Gene-Clustering
updated 10 months ago by
Ram
43k • written 9.7 years ago by
EagleEye
7.5k
56
votes
19
replies
4.1k
views
9 follow
Forum:
How to apply for a job
resume
cover-letter
application
CV
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Emily
23k
56
votes
12
replies
12k
views
9 follow
What Are The Public Sql Servers For Bioinformatics ?
online-server
sql
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Pierre Lindenbaum
161k
54
votes
10
replies
22k
views
10 follow
Finding Common Motifs In Sequences
motif
updated 6 months ago by
Ram
43k • written 14.6 years ago by
Fabio
▴ 130
54
votes
17
replies
5.8k
views
8 follow
Is annotation of enhancers to nearest gene pointless?
enhancer
annotation
updated 11 months ago by
Ram
43k • written 6.9 years ago by
BioinfGuru
★ 1.7k
54
votes
12
replies
28k
views
12 follow
Out Of Disk Space With Picard Tools ?
picard
updated 1 day ago by
kjngo
• 0 • written 12.0 years ago by
Gabriel R.
★ 2.9k
54
votes
13
replies
10k
views
6 follow
Tool:
Bedtools: Analyzing Genomic Features
bedtools
updated 9 months ago by
Ram
43k • written 12.0 years ago by
Istvan Albert
100k
54
votes
7
replies
4.0k
views
6 follow
Tool:
Looking For People That Would Try A Custom Genome Viewer That I Wrote For Bioinformatics
genome-viewer
updated 9 months ago by
Ram
43k • written 10.9 years ago by
chbelhumeur2000
▴ 40
53
votes
13
replies
7.8k
views
9 follow
Has Enhancer And Transcription Factor Binding Site Prediction Already Been Made Redundant?
transcription-factor-binding-site
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Allpowerde
★ 1.3k
52
votes
14
replies
40k
views
15 follow
Converting Bam To Fastq
next-gen-sequencing
fastq
updated 5 months ago by
Pierre Lindenbaum
161k • written 14.0 years ago by
Zach Stednick
▴ 660
52
votes
8
replies
59k
views
7 follow
Subsampling Bam File With Samtools
bam
samtools
updated 3 months ago by
giulia.trauzzi
▴ 10 • written 10.8 years ago by
madbessoul
▴ 250
52
votes
21
replies
49k
views
11 follow
Fastq Splitter For Paired End Reads
rna
updated 9 months ago by
Ram
43k • written 12.0 years ago by
Geparada
★ 1.5k
52
votes
8
replies
20k
views
6 follow
Fast Interval Intersection Methodologies
genomics
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Biostar User
★ 1.0k
52
votes
15
replies
30k
views
10 follow
Where To Download Pam50 Gene Set?
cancer
annotation
classification
updated 9 months ago by
DareDevil
★ 4.3k • written 10.7 years ago by
user
▴ 940
51
votes
6
replies
18k
views
Decoy In Reference Assembly
1000genomes
updated 11 months ago by
kmzhou4
• 0 • written 10.9 years ago by
Sangwoo Kim
▴ 420
51
votes
25
replies
6.8k
views
10 follow
What Is Your Experience With Bioinformatics Webservices?
web-service
subjective
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Michael
54k
50
votes
13
replies
56k
views
13 follow
Calculating TPM from featureCounts output
RNA-Seq
updated 6 months ago by
camillab.
▴ 160 • written 8.3 years ago by
nash.claire
▴ 490
50
votes
16
replies
14k
views
12 follow
Tool:
Omictools: A didactic directory for omic data analysis (NGS, microarray, PCR, MS, NMR)
pcr
software
ngs
updated 10 months ago by
Ram
43k • written 10.6 years ago by
arnaud.desfeux
▴ 450
50
votes
18
replies
36k
views
12 follow
ATAC-seq peak calling with MACS
atac-seq
macs
ChIP-Seq
peaks
updated 10 months ago by
Ram
43k • written 7.6 years ago by
igor
13k
49
votes
30
replies
11k
views
13 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 22 days ago by
Istvan Albert
100k • written 8.1 years ago by
Ram
43k
49
votes
20
replies
2.0k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 3 months ago by
Michael Love
★ 2.6k • written 3 months ago by
Mensur Dlakic
★ 27k
49
votes
18
replies
15k
views
12 follow
What Phylogeny Viewing Software Do You Use?
software
phylogenetics
visualization
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Roderic Page
▴ 390
48
votes
18
replies
32k
views
10 follow
How To Get Promoter Sequences For Human Genes?
promoter
sequence
human
genome
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Yuri
★ 1.7k
48
votes
8
replies
6.7k
views
8 follow
How Far Does Bioinformatics Go?
meta
subjective
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Egon Willighagen
5.4k
48
votes
9
replies
43k
views
10 follow
ClusterProfiler : What is GeneRatio and BgRatio?
clusterProfiler
updated 11 weeks ago by
Picasa
▴ 640 • written 7.5 years ago by
ZheFrench
▴ 570
48
votes
24
replies
8.2k
views
14 follow
Tool:
Hera: A new tool for RNA-Seq analysis
kallisto
RNA-Seq
STAR
gene-fusion
updated 10 months ago by
Ram
43k • written 6.7 years ago by
sonpham
▴ 580
48
votes
21
replies
5.1k
views
9 follow
What Online Gene-Centric Resources Do You Use?
gene
database
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Andrew Su
4.9k
48
votes
14
replies
26k
views
8 follow
Gene Network Construction... Web Based Tool
gene-network
updated 9 months ago by
Ram
43k • written 12.9 years ago by
Dataminer
★ 2.8k
47
votes
26
replies
4.1k
views
11 follow
Blog:
Evolution of Biostars
meta
Biostars
updated 8 months ago by
aldhairmedico
▴ 70 • written 5.2 years ago by
venu
7.1k
47
votes
15
replies
16k
views
10 follow
DESeq2 compare all levels
differential-gene-expression
RNA-Seq
DESeq2
updated 4 weeks ago by
Bionaught
• 0 • written 5.8 years ago by
firestar
★ 1.6k
47
votes
30
replies
4.3k
views
10 follow
Forum:
Bioinformatics software distribution
software
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Petr Ponomarenko
★ 2.8k
46
votes
18
replies
9.9k
views
8 follow
Tips To Build A Data Storage For Bioinformatics
data
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Jarretinha
3.4k
46
votes
13
replies
15k
views
13 follow
Tutorial:
Methylation Analysis Tutorial in R - Part 1
R
cancer
methylation
updated 5 weeks ago by
Konstantinos
• 0 • written 3.5 years ago by
Hamid Ghaedi
3.2k
46
votes
14
replies
27k
views
12 follow
Which Bioinformatics Tools Are Written In Python
python
updated 10 months ago by
Ram
43k • written 11.7 years ago by
Chen Sun
★ 1.1k
46
votes
16
replies
5.9k
views
12 follow
News:
Google announces DeepVariant
genome
deep-learning
google
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Hussain Ather
▴ 990
45
votes
19
replies
2.8k
views
9 follow
Forum:
Where and how NGS techniques are heading for the next 5 years?
next-gen
NGS
updated 11 months ago by
Ram
43k • written 6.9 years ago by
lakhujanivijay
5.8k
45
votes
9
replies
58k
views
FindConservedMarkers vs FindMarkers vs FindAllMarkers Seurat
next-gen
RNA-Seq
single-cell
R
updated 8 months ago by
camillab.
▴ 160 • written 4.4 years ago by
Payal
▴ 160
44
votes
4
replies
20k
views
Best way to compare two samples in a VCF file
VCF
Variant
Genotype
Comparison
SNP
updated 8 months ago by
Ram
43k • written 7.4 years ago by
Matteo Schiavinato
★ 3.6k
44
votes
9
replies
5.4k
views
6 follow
How Much Do You Trust Geneontology Annotations?
gene-function
subjective
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Giovanni M Dall'Olio
28k
43
votes
37
replies
2.5k
views
7 follow
Forum:
Checking the quality and reliability in bioinformatics
reproducibility
updated 11 months ago by
Ram
43k • written 6.5 years ago by
zizigolu
★ 4.3k
43
votes
12
replies
5.8k
views
11 follow
What Is The Best Way To Share Scripts Between Members Of A Lab?
general
subjective
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Giovanni M Dall'Olio
28k
43
votes
44
replies
5.7k
views
14 follow
Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinformatics stuff?
metagenomics
amplicon
macbook
Intel
MacOs
updated 6 months ago by
steve
★ 3.5k • written 6 months ago by
l.gallucci
▴ 10
43
votes
21
replies
5.4k
views
9 follow
Helping Biostar Grow
biostars
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Eric Normandeau
11k
43
votes
28
replies
5.6k
views
13 follow
Post Your Prefered Bioinformatics Short Code
code
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Eric Normandeau
11k
42
votes
15
replies
12k
views
12 follow
Preferred Tools For Making Analysis Pipeline Flowchart ?
pipeline
updated 10 months ago by
Ram
43k • written 11.2 years ago by
VS
▴ 730
42
votes
16
replies
33k
views
14 follow
Generating consensus sequence from bam file
genome
samtools
bwa
fasta
updated 7 months ago by
jkbonfield
★ 1.2k • written 5.1 years ago by
chparada
▴ 70
41
votes
13
replies
26k
views
13 follow
Gene Set Enrichment Analysis after DESeq2
RNA-Seq
DESeq2
geneontology
GSEA
updated 6 weeks ago by
CTLong
▴ 110 • written 6.5 years ago by
Sreeraj Thamban
▴ 290
41
votes
27
replies
5.9k
views
8 follow
Forum:
Why bioinformaticians need to know programming languages?
Python
R
Programming
updated 11 months ago by
Ram
43k • written 6.9 years ago by
nilo
▴ 90
40
votes
23
replies
4.1k
views
12 follow
Forum:
Why learn programming in bioinformatics?
Programming
updated 11 months ago by
Ram
43k • written 5.6 years ago by
joselu
▴ 110
40
votes
35
replies
13k
views
10 follow
find positions of a short sequence in a genome
sequence
search
updated 8 months ago by
Mark
★ 1.5k • written 7.6 years ago by
igor
13k
13,510 results • Page
3 of 271
Recent Votes
Answer: Duplicate marking, read names, and the SRA
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
Answer: Cellranger count error: Input FASTQ file ended prematurely
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
Answer: ClusterProfiler enrichKEGG – remove organism name in plots?
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alphaflylizard
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DanielEB_fisk
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Recent Replies
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
GenoMax
141k
According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
Comment: Duplicate marking, read names, and the SRA
by
GenoMax
141k
> fastq-dump is deprecated Curios if there a reference for this? `fasterq-dump` seems to allow for parallel streams but `fastq-dump` is st…
Comment: Duplicate marking, read names, and the SRA
by
Luka
• 0
>In many cases those remain recoverable using the -F option when you dump the data (cloud download not required) The -F option (or any equ…
Answer: Duplicate marking, read names, and the SRA
by
GenoMax
141k
To be specific, not every dataset in SRA loses the original identifiers. In many cases those remain recoverable using the `-F` option when …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
To use different versions of R and bioconductor, you don't really need RStudio. One can simply create new conda environments with the requi…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Done. Thank you.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
GenoMax
141k
Perhaps add the word linux/ubuntu to the title? You have noted that the instructions are for Ubuntu in text.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
BioinfGuru
★ 1.7k
Thanks @Ram I'll add that to the intro. I'm the admin on my machine so I haven't found it necessary to install any other way. I'll try a fr…
Comment: Downloading the raw microarray data from GEO
by
GenoMax
141k
No GPR files with this data unless you ask the submitters for them directly. You can find the matrix of data here: https://ftp.ncbi.nlm.nih…
Comment: Cellranger count error: Input FASTQ file ended prematurely
by
GenoMax
141k
That is odd. Thanks for following-up and providing an explanation.
Answer: Cellranger count error: Input FASTQ file ended prematurely
by
bp22
▴ 70
Dear all, The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
Ram
43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
Comment: Should I apply doublet detection for each pool seperately?
by
Ram
43k
Do not delete posts that have received feedback,
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