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4,513 results • Page
5 of 91
Sort: replies
Rank
Views
Votes
Replies
44
votes
11
replies
7.5k
views
8 follow
What are the advantages of using the T2T as a reference vs GRCh38 today?
reference
GRCh38
t2t
calling
variant
updated 3 months ago by
Gordon Smyth
★ 8.2k • written 2.2 years ago by
onter
▴ 170
5
votes
11
replies
2.8k
views
Locating IBD candidates with just VCF files
Relatedness
Genotypes
IBD
Haplotypes
VCF
5 months ago by
Joel Wallenius
▴ 220
5
votes
11
replies
2.2k
views
Determine type of Pacbio read
sratoolkit
CLR
Pacbio
Hifi
long-reads
updated 6 months ago by
GenoMax
152k • written 6 months ago by
María José
▴ 10
3
votes
11
replies
2.2k
views
6 follow
How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological replicates information?
DESEq2
DESEq
updated 11 months ago by
swbarnes2
15k • written 11 months ago by
ace
• 0
0
votes
11
replies
2.0k
views
Convert Gene ID To Gene Name
geneid
10 months ago by
min
• 0
16
votes
11
replies
11k
views
6 follow
Samtools flagstat results
next-gen
updated 10 months ago by
virog
• 0 • written 7.9 years ago by
Gene_MMP8
▴ 240
9
votes
11
replies
1.0k
views
How common is it to split fastq files prior to bwa mem to increase parallelization?
mem
bwa
alignment
updated 6 weeks ago by
Darked89
4.7k • written 7 weeks ago by
curious
▴ 890
24
votes
11
replies
1.9k
views
7 follow
Tool:
A simple and lightweight tool for filtering csv file wirtten in Rust
gtf
tab
gff
vcf
csv
updated 9 months ago by
Matthias Zepper
5.1k • written 9 months ago by
dwpeng
▴ 120
5
votes
11
replies
6.2k
views
7 follow
How do I load a peak file in ChIPseeker?
chipseeker
updated 9 months ago by
e.r.zakiev
▴ 260 • written 5.2 years ago by
massimofaggiani
• 0
23
votes
11
replies
19k
views
6 follow
CIBERSORT deconvolution advice
CIBERSORT
CIBERSORTx
deconvolution
updated 5 months ago by
Nguyen
• 0 • written 5.3 years ago by
joker33
▴ 150
3
votes
11
replies
6.0k
views
7 follow
How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by cell barcode?
10xgenomics
RNAseq
scRNA
CB
updated 11 months ago by
GenoMax
152k • written 3.0 years ago by
MYousry
▴ 20
4
votes
11
replies
1.7k
views
Counts after using feature counts is low
hisat2
featureCounts
lowcounts
updated 7 months ago by
GenoMax
152k • written 7 months ago by
rajdeepboral00
▴ 70
2
votes
11
replies
2.5k
views
KeepBothReads in Trimmomatic
Trimmomatic
PE-reads
9 months ago by
mariannapauletto
▴ 90
19
votes
11
replies
4.2k
views
Unable to Create Index file of VCF
VCF
updated 10 months ago by
GenoMax
152k • written 2.4 years ago by
anasjamshed
▴ 140
3
votes
11
replies
3.7k
views
Rosetta make_fragments.pl fails: "Cannot initialize readdb for nr database"
software-error
nr
rosetta
updated 11 months ago by
Noora
• 0 • written 5.2 years ago by
Alex_I
• 0
56
votes
11
replies
50k
views
When and why is bwa aln better then bwa mem?
aln
comparison
bwa
mem
10 weeks ago by
dariober
15k
0
votes
11
replies
723
views
Error Correction with Tadpole and BBMerge
BBmerge
tadpole
error
correction
15 days ago by
Jon
• 0
6
votes
11
replies
1.7k
views
sequenceTubeMap input files
sequencetubemap
vg
updated 11 months ago by
Jordan M Eizenga
▴ 740 • written 11 months ago by
Mayank
▴ 10
5
votes
11
replies
1.2k
views
Cut&Run TF Analysis - Very Low Peak Counts Despite Good Library Quality
macs2
cutandrun
chipseq
updated 4 weeks ago by
jared.andrews07
★ 19k • written 6 weeks ago by
sk
▴ 20
1
vote
11
replies
2.0k
views
error to run rnammer
phylogenomics
rRNA_extraction
rnammer
updated 5 months ago by
Arslan Tariq
▴ 140 • written 18 months ago by
microorganism_001
▴ 30
6
votes
11
replies
5.2k
views
Randomly select a number of variants and samples from a multi-sample VCF file (pVCF)
vcf
pvcf
updated 10 months ago by
Michael
56k • written 2.5 years ago by
'
▴ 330
3
votes
11
replies
1.7k
views
FASTQC: per base n content fail
FASTQC
updated 12 months ago by
GenoMax
152k • written 12 months ago by
Eddie
• 0
1
vote
11
replies
1.2k
views
OMA use case
oma
omastandalone
updated 3 months ago by
GenoMax
152k • written 3 months ago by
nmalexan
• 0
0
votes
11
replies
1.8k
views
Differential gene expression
DESEq2
Differential
gene
expression
updated 10 months ago by
OmnibusX
▴ 100 • written 10 months ago by
4732b159
• 0
0
votes
11
replies
1.5k
views
Why do I have * in my FASTA? g2gtools diploid
g2gtools
RNAseq
FASTA
genome
transcriptome
11 months ago by
jon.klonowski
▴ 210
11
votes
11
replies
1.9k
views
Can't increase font size for x axis
R
ggplot2
11 months ago by
Chris
▴ 360
1
vote
11
replies
1.4k
views
Use R to Produce CpG Information
R
CpG
10 months ago by
Dana
• 0
6
votes
10
replies
2.8k
views
7 follow
Using GEOquery
R
geo
ncbi
updated 9 months ago by
Ram
45k • written 2.7 years ago by
Aryan
▴ 40
53
votes
10
replies
39k
views
9 follow
How is the design in DESeq2 work?
deseq2
updated 5 months ago by
Ram
45k • written 7.7 years ago by
MAPK
★ 2.1k
1
vote
10
replies
3.5k
views
Bedmethyl file format
bedmethyl
methylation
updated 4 months ago by
lavigne
• 0 • written 14 months ago by
njornet
▴ 20
26
votes
10
replies
28k
views
6 follow
What is the best way to rank genes for GSEA?
GSEA
GO
Gene ranking
RNA-Seq
updated 9 months ago by
hermidalc
▴ 70 • written 6.2 years ago by
Gabriel
▴ 180
53
votes
10
replies
58k
views
11 follow
ClusterProfiler : What is GeneRatio and BgRatio?
clusterProfiler
updated 6 weeks ago by
chong.weelic
• 0 • written 8.7 years ago by
ZheFrench
▴ 590
9
votes
10
replies
4.2k
views
6 follow
activity of unloaded/unassembled Tn5
next-gen-sequencing
updated 7 months ago by
LChart
5.0k • written 7.4 years ago by
zhaohainancau
• 0
6
votes
10
replies
3.2k
views
Minimap2 error in Flye de novo assembly
Flye
Minimap2
8 weeks ago by
Nilo
▴ 20
6
votes
10
replies
1.7k
views
Low mapping rate using SALMON
RNA-SEQ
updated 10 months ago by
GenoMax
152k • written 11 months ago by
Pegasus
▴ 130
3
votes
10
replies
1.5k
views
Genome Assembly Verification, Chimeric contigs
flye
genome
assembly
fungus
updated 8 months ago by
alex.zaccaron
▴ 480 • written 8 months ago by
SomeOne
▴ 240
6
votes
10
replies
1.9k
views
6 follow
High Detection of Duplication in RNAseq dataset
Deduplication
RNAseq
updated 7 months ago by
i.sudbery
21k • written 10 months ago by
karlensberg
• 0
1
vote
10
replies
1.6k
views
How to create a command that matches 13 characters in each column to be extracted into a new file, and leave behind the unmatched ones
featureCounts
updated 4 months ago by
Ram
45k • written 4 months ago by
MetagenomicsPlease
• 0
1
vote
10
replies
1.7k
views
Does mageck-vispr calculate differently than mageck?
mageck
mageck-vispr
pooled-screen
cripsr
8 months ago by
Assa Yeroslaviz
★ 1.9k
3
votes
10
replies
1.5k
views
Error in conversion of ensembl to gene names
Ensembl
BioMart
updated 6 months ago by
Istvan Albert
102k • written 7 months ago by
anasjamshed
▴ 140
6
votes
10
replies
6.3k
views
6 follow
How to use output from GeneMark-ES to identify function?
GeneMark-es
annotation
updated 9 months ago by
Ian
6.1k • written 8.4 years ago by
nut_B
▴ 10
9
votes
10
replies
1.0k
views
STAR vs. Kallisto
STAR
kallisto
alignment
RNA-Seq
mapping
updated 10 weeks ago by
dsull
★ 7.6k • written 10 weeks ago by
gogeni5529
▴ 70
1
vote
10
replies
1.6k
views
ncRNA database for mus
contamination
ncRNA
sequencing
updated 10 months ago by
Jack Tierney
▴ 450 • written 10 months ago by
tommy
▴ 40
9
votes
10
replies
6.3k
views
11 follow
Forum:
insert figure and code in the post of Biostars?
meta
biostars
updated 7 months ago by
Saeed
▴ 10 • written 10.1 years ago by
Zhilong Jia
★ 2.2k
1
vote
10
replies
2.9k
views
Question about CIBERSORTx Docker to Singularity
CIBERSORTx
docker
singularity
updated 7 months ago by
Jose
• 0 • written 13 months ago by
jinghuang800
▴ 10
6
votes
10
replies
1.2k
views
6 follow
Snakemake config errors
slurm
hpc
snakemake
updated 5 months ago by
dariober
15k • written 5 months ago by
r.ackbersingh
▴ 30
1
vote
10
replies
8.6k
views
6 follow
vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix.
vcftools
vcf
updated 11 months ago by
Ram
45k • written 6.7 years ago by
mayara.salvian
▴ 10
4
votes
10
replies
1.2k
views
Question about an alignment
ces
sequencing
alignment
3 months ago by
barslmn
★ 2.4k
3
votes
10
replies
3.7k
views
TOM matrix generated by WGCNA package in R
WGCNA
updated 6 months ago by
GenoMax
152k • written 3.4 years ago by
Dude
• 0
76
votes
10
replies
180k
views
8 follow
Fold change - a final explanation
RNA-Seq
updated 7 weeks ago by
i.sudbery
21k • written 6.8 years ago by
Sebastian Hesse
▴ 350
4,513 results • Page
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152k
Please edit and add the solution you found so it helps future visitors. Just saying "fixed" provides no useful information.
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This has been fixed
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so I have a template with that design, where some bases are fixed, others are diverse on purpose. However, those reads that generated from …
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What is an Nx plot and what is it you're trying to visualise?
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I can only use tools that are available on Usegalaxy.org Europe Site. BBmap on there will only do FASTQ Does Minimap2 align the contigs…
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