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filtering on F_PASS(GT="het") in bcftools gives contradictory results
bcftools snp filtering written 4 weeks ago by scottbrainard • 30 • updated 1 minute ago by Biostar ♦♦ 20
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2
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96
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2
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Single-cell RNAseq for glia
rna-seq sequencing written 23 hours ago by genetics78 • 0 • updated 35 minutes ago by Pancreas Pratik • 110
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1
answer
71
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1
answer
nextflow set tuple issue
software error written 15 hours ago by joe • 0
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1
answer
45
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1
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Facing issue while installing Bio::SeqIO module
bioseqio written 2 days ago by madhujamano • 0 • updated 47 minutes ago by Ram ♦ 32k
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30
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Whole Genome Sequencing: Identification of genomic differences
genome written 2 hours ago by yiren • 0 • updated 2 hours ago by GenoMax ♦ 96k
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20
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FitHiChIP issue input file
next-gen hichip written 2 hours ago by roberto.ferrari1 • 0 • updated 2 hours ago by GenoMax ♦ 96k
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1
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1
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Data access through python
annovar refgene exac snp python written 10 hours ago by Bala Hatun • 0 • updated 3 hours ago by GenoMax ♦ 96k
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1
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45
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1
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Why I can't download gtf files from GenCode
gene R written 10 hours ago by p1345308560 • 0 • updated 3 hours ago by GenoMax ♦ 96k
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1
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47
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1
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FASTQ,BAM and VCF file size for 300X WES samples
next-gen storage sequencing written 5 hours ago by rajeefa • 10 • updated 3 hours ago by GenoMax ♦ 96k
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Gatk spark beta
genome gatk spark written 4 hours ago by quentin54520 • 0
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280 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 4.3 years ago by Istvan Albert ♦♦ 86k • updated 4 hours ago by meriv41409 • 0
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2
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89
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7 follow
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Want to reverse the fasta sequence
fasta written 12 hours ago by harry • 10 • updated 4 hours ago by predeus • 1.5k
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HTSeq counts gives zero when I can see the reads in the BAM file
htseq htseq-counts written 8 hours ago by blur • 180 • updated 5 hours ago by ATpoint ♦ 46k
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Tool: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
sbgn pathway analysis visualization pathview tool written 3 days ago by bigmawen • 390 • updated 5 hours ago by greyman • 110
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How to align zebrafish RNA-seq data against a reference genome with splice sites using hisat2?
fastq alignment zebrafish rna-seq hisat2 written 5 weeks ago by tara • 20 • updated 6 hours ago by Biostar ♦♦ 20
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how to determine low quality variants in vcf files
vcf variant_depth written 8 hours ago by pt.taklifi • 60
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75
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I cannot open jalview on linux
ubuntu java jalview written 3 days ago by hamid.gaikani • 10
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2
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Sciclone on exome sequencing data
copy number sciclone exome seq written 5.0 years ago by cbst • 150 • updated 12 hours ago by Biostar ♦♦ 20
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2.5k
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2
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where can I download convertf (to convert vcf/plink files into eigenstrat)
format convert convertf eigenstrat written 3.4 years ago by angelaparody • 80 • updated 14 hours ago by 1311703846 • 0
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33
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Graphtyper vs GATK
gatk graphtyper written 15 hours ago by Friyunnwoo • 10
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How to compare two datasets of proteomic analysis when there are unique and common proteins?
proteomics mass spectrometry protein replication written 16 hours ago by Farah • 70
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72
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top geo ontology
rna-seq written 19 hours ago by aranyak111 • 0
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50
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RnBeads data preprocessing error
R rnbeads written 16 hours ago by Clyndas • 0
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80
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Tetraploid vcf structure format
snp written 16 hours ago by wangh920 • 0
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1
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1.8k
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1
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BOLD systems database for qiime?
bold qiime written 4.3 years ago by agata88 • 810 • updated 18 hours ago by Biostar ♦♦ 20
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2
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113
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6 follow
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Estimate running time of a program
gene genome bacteria written 23 hours ago by dago • 2.6k • updated 19 hours ago by Michael Dondrup ♦ 48k
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plotting the tree in XGBoost
#xgboost written 23 hours ago by mrashad • 50 • updated 22 hours ago by Mensur Dlakic • 9.1k
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137
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Error occur during tophat2 downloading
tophat2 make written 5 weeks ago by harry • 10 • updated 22 hours ago by rpolicastro ♦ 4.0k
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Cox regression on Splicing. PSI in 0 to 1 or 0 to 100 range
cox rna-seq written 22 hours ago by mario.keller1988 • 0
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91
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1
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GEOquery loading error.
geo R written 1 day ago by angus.j.g.campbell • 10 • updated 1 day ago by predeus • 1.5k
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