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361
votes
16
answers
26k
views
166 follow
16
answers
News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 19 months ago by Istvan Albert ♦♦ 77k • updated 2 hours ago by Vijay Lakhujani2.8k
1
vote
2
answers
897
views
2
answers
Creating a dotplot from LASTZ output
dotplot lastz written 15 months ago by cmdcolin790
3
votes
2
answers
652
views
2
answers
How to work PLINK from server?
snp written 20 months ago by forever60 • updated 2 hours ago by Biostar ♦♦ 20
3
votes
2
answers
1.3k
views
2
answers
SNP-masking before short-read alignment to human genome
reference bias snp human rna-seq written 3.1 years ago by roberto.spreafico10 • updated 20 hours ago by Biostar ♦♦ 20
1
vote
2
answers
3.1k
views
5 follow
2
answers
How To Plot Rarefaction/Saturation Curve Based On Bam File Generated By Tophat?
tophat written 5.1 years ago by huangqp198410 • updated 1 hour ago by achamess30
7
votes
2
answers
113
views
5 follow
2
answers
(Closed) accessing variable value outside the function
python written 8 hours ago by mdsiddra10 • updated 5 hours ago by gb240
2
votes
2
answers
493
views
2
answers
How to get the range of LOH?
cnvkit written 11 months ago by Tonny20 • updated 6 hours ago by Shixiang20
8
votes
2
answers
2.5k
views
2
answers
2
votes
2
answers
1.0k
views
2
answers
Find a pubmed abstract based on its similarity with a paragraph of text
pubmed abstract written 3.7 years ago by cardinal28184130 • updated 8 hours ago by Biostar ♦♦ 20
1
vote
2
answers
115
views
2
answers
Problem with Bedtools
rna-seq written 21 hours ago by alvarocentron910 • updated 3 hours ago by Jeffin Rockey590
2
votes
1
answer
2.7k
views
1
answer
Obtain NCBI Taxonomy ID from local blast output
blast written 3.1 years ago by ntmarshall40610 • updated 46 minutes ago by h.mon16k
1
vote
1
answer
100
views
5 follow
1
answer
Affymetrix Human Genome U133 Plus 2.0 Array - probe annotation with biomaRt
R written 3 days ago by sujasubramanian20 • updated 2 hours ago by Kevin Blighe24k
2
votes
1
answer
72
views
5 follow
1
answer
3
votes
1
answer
91
views
1
answer
0
votes
1
answer
515
views
1
answer
0
votes
1
answer
68
views
1
answer
Extracting Variants from large set of variants
variant calling vcf wgs data written 8 hours ago by bioinfo3550 • updated 8 hours ago by Pierre Lindenbaum110k
3
votes
1
answer
89
views
1
answer
0
votes
1
answer
48
views
1
answer
SOAP DENOVO outfile (.scafSeq)
genome assembly written 5 days ago by preranakoti930 • updated 16 hours ago by h.mon16k
0
votes
1
answer
86
views
1
answer
2
votes
1
answer
931
views
1
answer
Calculate distances between items in different GRanges
R bioconductor granges written 18 months ago by igor6.4k • updated 2 hours ago by zx87544.7k
2
votes
1
answer
67
views
1
answer
collapsing GFF coordinates with common start OR stop
bedtools perl gff parse script written 18 hours ago by Anand Rao150 • updated 17 hours ago by h.mon16k
2
votes
1
answer
74
views
1
answer
SNP difference between isolates
mycobacterium tuberculosis snpeff snp written 8 hours ago by sanjay.bpkihs0 • updated 8 hours ago by Medhat7.6k
4
votes
1
answer
84
views
1
answer
Bedtools -Sorted Genome File
bedtools written 11 hours ago by gtasource10 • updated 11 hours ago by finswimmer3.6k
0
votes
1
answer
72
views
1
answer
can lnc-RNA target coding RNA?
mrna lnc-rna rna written 25 days ago by ta_awwad130 • updated 5 hours ago by EagleEye5.5k
0
votes
1
answer
74
views
1
answer
Downloading Genome Assembly and Annotation report from NCBI
genome written 15 hours ago by saadleeshehreen40 • updated 14 hours ago by genomax52k
0
votes
1
answer
75
views
1
answer
Mutations in enzymes
bioinformatics predicting efficient mutations written 18 hours ago by hinabatool.mphil.sbs0 • updated 2 hours ago by jrj.healey5.0k
0
votes
1
answer
48
views
1
answer
How can I get alleles about each sample?
gene plink snp written 5 hours ago by haruomomo.goo0 • updated 2 hours ago by Kevin Blighe24k
2
votes
1
answer
92
views
1
answer
GSEA output interpretation
gene rna-seq written 2 days ago by krushnach80320 • updated 21 hours ago by h.mon16k
5
votes
1
answer
81
views
1
answer
Small RNAseq data with untrimmed reads left after trimming process
adapters trimming smallrnaseq rna-seq written 18 hours ago by MAPK1.2k • updated 18 hours ago by h.mon16k
0
votes
0
answers
52
views
0
answers
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