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530
votes
23
answers
54k
views
252 follow
23
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 3.6 years ago by Istvan Albert ♦♦ 84k • updated 1 hour ago by Maciej Motyka • 40
210
votes
1
answer
61k
views
214 follow
1
answer
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 4.9 years ago by TriS • 4.2k • updated 6 months ago by jnmcluo • 0
232
votes
8
answers
110k
views
201 follow
8
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.9 years ago by Obi Griffith ♦ 18k • updated 6 months ago by Chvatil • 40
267
votes
11
answers
31k
views
190 follow
11
answers
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
forum papers tutorial rna-seq sequencing written 4.4 years ago by CandiceChuDVM • 2.1k
334
votes
8
answers
118k
views
180 follow
8
answers
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel tools next-gen ngs tool written 7.4 years ago by ole.tange • 3.8k
252
votes
7
answers
15k
views
179 follow
7
answers
Forum: Bioinformatics courses, workshops or training
tutorial training forum courses workshop written 5.2 years ago by Deepak Tanwar • 4.0k
1058
votes
73
answers
33k
views
170 follow
73
answers
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software forum written 9.3 years ago by Jeremy Leipzig ♦ 19k • updated 6 weeks ago by zx8754 ♦ 9.3k
211
votes
0
answers
58k
views
150 follow
0
answers
Tutorial: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
tutorial coordinates written 6.7 years ago by Obi Griffith ♦ 18k
176
votes
2
answers
59k
views
136 follow
2
answers
Tutorial: Analysing Microarray Data In Bioconductor
tutorial analysis bioconductor microarray written 7.8 years ago by Obi Griffith ♦ 18k • updated 9 weeks ago by lsbw • 0
271
votes
11
answers
158k
views
126 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 9.5 years ago by Biomed ♦ 4.7k • updated 23 months ago by WouterDeCoster ♦ 44k
187
votes
1
answer
94k
views
121 follow
1
answer
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 7.4 years ago by Malachi Griffith ♦ 18k
141
votes
17
answers
47k
views
118 follow
17
answers
Tutorial: Tools For Metagenomic Data Analysis
metagenomics next-gen tutorial written 7.6 years ago by vijay • 1.5k • updated 23 months ago by MetaTK • 20
218
votes
5
answers
167k
views
115 follow
5
answers
How To Filter Mapped Reads With Samtools
samtools written 7.7 years ago by sohadb1357 • 510 • updated 7 months ago by mahdi_sh1387 • 0
339
votes
26
answers
41k
views
107 follow
26
answers
Recommend Your Favorite Bioinformatics Books
books education written 10.4 years ago by Istvan Albert ♦♦ 84k • updated 10 months ago by sagor.ced01 • 0
220
votes
18
answers
254k
views
106 follow
18
answers
Gene Id Conversion Tool
mapping conversion written 10.7 years ago by Renee • 620 • updated 4 months ago by tamerg • 80
96
votes
0
answers
8.8k
views
102 follow
0
answers
Tutorial: Survival analysis with gene expression
geo survival analysis tutorial gene expression cox written 20 months ago by Kevin Blighe ♦ 61k • updated 21 days ago by Hamtaro • 10
135
votes
5
answers
42k
views
102 follow
5
answers
Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
cancer tutorial tcga maf music mutation written 7.2 years ago by Cyriac Kandoth ♦ 5.5k • updated 2.4 years ago by Shicheng Guo • 8.3k
148
votes
16
answers
21k
views
98 follow
16
answers
Which Bioinformatic Friendly Pipeline Building Framework?
scripting written 6.5 years ago by Carlos Borroto • 1.9k
110
votes
1
answer
22k
views
95 follow
1
answer
Tutorial: Network plot from expression data in R using igraph
R network tutorial rna-seq microarray written 2.6 years ago by Kevin Blighe ♦ 61k
82
votes
0
answers
26k
views
93 follow
0
answers
Tutorial: Machine Learning For Cancer Classification - Part 1 - Preparing The Data Sets
bioconductor expression classification microarray tutorial written 6.7 years ago by Obi Griffith ♦ 18k • updated 3.6 years ago by yuanjun.ma • 0
233
votes
12
answers
6.2k
views
84 follow
12
answers
Forum: Good Habit for Bioinformatics Analyst or Scientist
analyst forum habit scientist written 4.2 years ago by Shicheng Guo • 8.3k
138
votes
5
answers
24k
views
82 follow
5
answers
Tutorial: A few words for R beginners
R beginner swirl tutorial written 5.6 years ago by Parham • 1.5k • updated 3.8 years ago by hed.robin • 30
117
votes
8
answers
56k
views
80 follow
8
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 8.2 years ago by Ying W • 4.0k • updated 4.6 years ago by Yaseen Ladak • 30
178
votes
11
answers
67k
views
79 follow
11
answers
Drawing Chromosome Ideograms With Data
visualization ideogram chromosome written 10.3 years ago by Yuri • 1.5k • updated 2.6 years ago by bernatgel • 2.6k
232
votes
15
answers
64k
views
78 follow
15
answers
What Is The Best Pipeline For Human Whole Exome Sequencing?
exome illumina next-gen human sequencing written 10.1 years ago by Biomed ♦ 4.7k • updated 5.4 years ago by Barry • 40
90
votes
1
answer
16k
views
78 follow
1
answer
Tutorial: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
fastq ena fastq-dump tutorial aspera written 2.0 years ago by ATpoint ♦ 36k • updated 4 weeks ago by Arindam Ghosh • 280
280
votes
25
answers
14k
views
77 follow
25
answers
Bioinformatics "Cheat Sheet"
written 9.3 years ago by Chris Miller ♦ 21k • updated 3.7 years ago by jokipokemon0002 • 0
114
votes
9
answers
30k
views
74 follow
9
answers
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 4.3 years ago by Sinji • 3.0k • updated 6 months ago by Ömer An • 200
68
votes
0
answers
59k
views
72 follow
0
answers
Tutorial: Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
R tutorial classification cancer written 6.6 years ago by Nicholas Spies • 1.1k • updated 22 months ago by RamRS ♦ 27k
310
votes
38
answers
17k
views
72 follow
38
answers
Your Favorite Bioinformatics Blogs (March 2010)
subjective written 10.4 years ago by Giovanni M Dall'Olio ♦ 27k • updated 2.0 years ago by CY • 480
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