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16
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How to get transcript ID and tpm from the gtf files of ballgown outputs?
gtf ballgown hisat2 rna-seq awk written 54 minutes ago by newbie90 • updated just now by _r_am31k
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HOMER annotatePeaks.pl with GFF. How to specify a feature?
homer gff chip-seq peakcalling annotation written 9 months ago by callapus0 • updated 47 minutes ago by Biostar ♦♦ 20
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27
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2
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Read depth maxing out at about 8000
genome read-depth sequencing written 1 hour ago by ben830 • updated 1 hour ago by karl.stamm3.9k
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1
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VariantsToTable in GATK does not produce the table of all SNPs in the vcf file
gatk written 2.3 years ago by Ana180 • updated 1 hour ago by Christopher Walker50
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2
answers
71
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2
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A question in terms of definition
genome wgs cnv written 23 hours ago by A3.9k • updated 1 hour ago by Qiongyi10
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15
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0
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556
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24
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59k
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273 follow
24
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 4.0 years ago by Istvan Albert ♦♦ 86k • updated 2 hours ago by Shalu Jhanwar470
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14
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15
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1.4k
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15
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760
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(Closed) retrieving active LINE1 elements
repetitive line1 written 3.3 years ago by milanlove0 • updated 6 hours ago by Biostar ♦♦ 20
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667
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1
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Biological Replicates At Two Time Points in 16S rRNA Dataset
sequencing next-gen metataxonomics written 2.5 years ago by zabendiks0 • updated 8 hours ago by dago2.6k
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126
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6 follow
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What happens if a UMI fragment has a PCR artefact?
unique moleculer identifier written 1 day ago by asumani70 • updated 11 hours ago by i.sudbery9.8k
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5 follow
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Obtaining SNPs with large samples in a short time
snp written 15 hours ago by Daier0 • updated 12 hours ago by Qiongyi10
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126
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1
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How to perform the lncRNA enrichment analysis?
enrichment gene ontology lncrna written 26 days ago by mathavanbioinfo50 • updated 12 hours ago by Qiongyi10
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1
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60
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1
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0
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1
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74
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1
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Novel protein identification
alignment written 1 day ago by a.mostafa50500 • updated 15 hours ago by Qiongyi10
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223
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(Closed) Handling bwa double free or corruption related core dump on an HPC
bwa snp written 8 months ago by rizoic230 • updated 18 hours ago by Biostar ♦♦ 20
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2
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86
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5 follow
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How to convert realign BAM file into fastq file
software error alignment written 1 day ago by Daier0 • updated 19 hours ago by opplatek50
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1
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2.7k
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1
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SIGNATURE MATRIX IN CIBERSORT
software error gene rna-seq written 3.4 years ago by pierangela.bruno20 • updated 19 hours ago by dare_devil10
3
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2
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4.2k
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2
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Unlisting lists inside data frame and collapsing their values in R
R lists dataframe unlist written 3.2 years ago by arronar240 • updated 20 hours ago by opplatek50
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47
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0
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Using Parallel GNU
trimming parallel unix written 21 hours ago by Ash0 • updated 20 hours ago by _r_am31k
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98
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0
answers
1
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