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8
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Querying GEO and TCGA
sequencing written 47 minutes ago by silsie645 • 0
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24
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error in TXIMPORT command for RSEM
tximport rsem written 4 hours ago by HKS • 10 • updated 1 hour ago by Kevin Blighe ♦ 59k
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17
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WGBS Data Analysis Related
next-gen sequencing written 2 hours ago by shrinka.genetics • 0 • updated 1 hour ago by RamRS ♦ 27k
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69
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kraken2 don't output report files
kraken2 written 5 weeks ago by 15250967477 • 0 • updated 2 hours ago by Biostar ♦♦ 20
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25
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0
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DESeq2 rlogTransformed count data have negative values. Why are they negative?
R rna-seq written 3 hours ago by okna0215 • 0
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1
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26
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1
answer
Using bcftools merge on the output of multiple process substitution? (somewhat a linux question)
linux written 3 hours ago by curious • 280
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17
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MOTHUR "screen.seqs" command option
microbiome mothur metagenome 16s written 4 hours ago by DC7 • 20
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25
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0
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PorthoMCL for Ortholog Clustering
orthologous clustering written 5 hours ago by brittanymlebert • 10
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25
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Megan SEED analysis
gene metagenomics tool megan written 6 hours ago by carolinnerdc • 0 • updated 5 hours ago by ATpoint ♦ 34k
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1
answer
59
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1
answer
Error with using getBM function in biomaRt
software error R biomart rna-seq written 8 hours ago by morteza.aslanzadeh • 10
1
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0
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55
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GWAS vs other bioinformatics methods
genome gene rna-seq written 8 hours ago by warriorgirl073095 • 0
1
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1
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48
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1
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Subset DEG from Deseq2-use padj from results() or lfcShrink()?
deseq2 rna-seq written 9 hours ago by s.l.lee • 0
1
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0
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882
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0
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Same pathways between different diseases
gene written 3.9 years ago by goro • 0 • updated 8 hours ago by Biostar ♦♦ 20
520
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23
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52k
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243 follow
23
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 3.5 years ago by Istvan Albert ♦♦ 84k • updated 8 hours ago by DataFanatic • 200
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1
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58
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1
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Phasing a trio in multi-sample vcf with zygosity
genome written 3 days ago by ellieuk • 0 • updated 8 hours ago by Pierre Lindenbaum ♦ 128k
1
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1
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70
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1
answer
remove Batch Effect between several **RNA-seq** studies (no replication)
rna-seq written 12 hours ago by snstab • 0 • updated 10 hours ago by ATpoint ♦ 34k
0
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0
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55
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0
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Roary error message : MSG: Got a sequence without letters. Could not guess alphabet
software error assembly alignment sequencing written 10 hours ago by elkassah96 • 0
5
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1
answer
67
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1
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Usage of selectLab in PCAtools, R
R pcatools written 13 hours ago by Sebastian Hesse • 100
1
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1
answer
56
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1
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How to map ChEMBL ID to Entrez Gene?
chembl entrez drugbank written 1 day ago by Elmira • 0
1
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0
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64
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0
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Seqkit - change regex for parsing ID
duplicates database seqkit regex written 4 days ago by marlenejensen • 20
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35
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0
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Intersectbed of Homer and MAcs2 peak caller results
software error alignment chip-seq written 12 hours ago by bulkybogany • 0
2
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1
answer
48
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1
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Improving reference gtf annotation via merging with alternative gtf annotations - how?
gtf gff3 merge gene annotation written 13 hours ago by epaminonda • 10
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0
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47
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0
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how to excute plink on colab
software error written 15 hours ago by nayeona.hi • 30
3
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1
answer
2.4k
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1
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Help understanding Deseq2 '~group' contrasts
deseq2 de rna-seq written 4.0 years ago by mbio.kyle • 360 • updated 14 hours ago by Biostar ♦♦ 20
7
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1
answer
91
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6 follow
1
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Which tool is best for getting genomic data analysis?
hail.is genome tools next-gen data-analysis written 15 hours ago by akshaykum684 • 0
1
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0
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44
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0
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RNA-seq wig to matrix
ihec rna-seq written 16 hours ago by zhichengji • 0
1
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0
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82
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0
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Genomic data analysis - Beginner
genome tutorial beginner dataanalysis written 16 hours ago by akshaykum684 • 0
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1
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40
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1
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Assigning gene identifiers to SNPs with bcftools annotate
snp written 17 hours ago by maxa • 0
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0
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49
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Many paralogous genes in GO enrichment results
gene enrichment rna-seq go written 17 hours ago by tianshenbio • 40
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0
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47
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0
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Very low probability densities
R written 17 hours ago by rishi • 10
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