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Merging public vcf files: <NON_REF> in ALT
vcf gatk bcf written 5 hours ago by jimkozubek • 0
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65
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Mapping and annotating DNA binding regions from ChIP-Seq to nearby gene
annotation chip-seq written 1 day ago by oriolebaltimore • 60 • updated 3 hours ago by Kevin Blighe ♦ 21k
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STREAM for identifying cell type
xcell rna-seq cell-type enrichment written 8 hours ago by kanwarjag • 890 • updated 3 hours ago by Kevin Blighe ♦ 21k
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65
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Inferring genotype based on RNA sequnces
rna-seq snp written 1 day ago by omer.k • 20 • updated 3 hours ago by Kevin Blighe ♦ 21k
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107
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SOAPdenovo statistics output for Nx
n50 soapdenovo assembly nx l50 written 7 weeks ago by deepti1rao • 0 • updated 3 hours ago by Biostar ♦♦ 20
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5 follow
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Total number of genes in hg38
rna-seq written 13 hours ago by Glory Basumata • 0 • updated 4 hours ago by WouterDeCoster ♦ 29k
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273
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CAI in python: SeqUtils.CodonUsage vs CAI package
sequtils codon biopython cai written 6 months ago by grassostefan • 0 • updated 4 hours ago by benjamindlee • 0
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55
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How tximport work with gencode transcripts?
R rna-seq written 17 hours ago by Sharon • 320 • updated 5 hours ago by Kevin Blighe ♦ 21k
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27
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Tutorial: Pathway Enrichment Analysis, Clustering and Scoring with pathfindR
pathway R tutorial active subnetwork enrichment written 5 hours ago by egeulgen • 190
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Deeptools plotHeatmap: too much black! missing data assigned incorrectly
plotheatmap deeptools missing data computematrix written 6 hours ago by davidcking.inbox • 0
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164 follow
16
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 18 months ago by Istvan Albert ♦♦ 77k • updated 6 hours ago by Vijay Lakhujani ♦ 2.5k
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Matched paired DEA analysis of BRCA samples using TCGAbiolinks, works for paired = FALSE but not paired = TRUE
tcgabiolinks R rna-seq written 18 hours ago by aluesley1 • 20
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DESeq2 results difference between use of lfcThreshold and sequential cutoffs.
deseq2 written 8 hours ago by mccormack • 20 • updated 7 hours ago by cpad0112 ♦ 6.3k
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57
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Can someone explain what the -M option in BWA-MEM does?
alignment bwa written 9 hours ago by James Reeve • 10 • updated 9 hours ago by Devon Ryan ♦ 81k
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1
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51
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Best way to systematically select ENCODE data to download?
encode written 3 days ago by Eric Lim • 600
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47
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What is the definition of "multiply aligned" sequences compared to multiple aligned sequence
sequence alignment dna written 9 hours ago by beausoleilmo • 190
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Job: Bioinformatics and computational biology research associate (predoctoral) positions, The University of Alabama at Birmingham, AL, USA
R ngs computational biology biinformatics job written 9 hours ago by malaykbasu • 10 • updated 9 hours ago by genomax ♦ 49k
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538
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Input needed on conclusion reporting
de novo assembly alignment written 2.2 years ago by skbrimer • 500 • updated 9 hours ago by Biostar ♦♦ 20
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346
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1
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Where to find Drosophila melanogaster de novo transcript assembly data?
drosophila assembly de novo transcriptome written 7 months ago by Peter vH • 100 • updated 10 hours ago by jaudall • 0
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53
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plasmid assemby from Illumina reads - help!
assembly written 10 hours ago by rebeccarenberg • 0
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77
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Different output files from "Shapeit -check"
shapeit snp imputation strand alignment phasing written 10 days ago by lattes666 • 0
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Job: Oncology Computational Biologist position at Janssen R&D (Johnson & Johnson), Spring House, PA, USA
ngs drug discovery job genomics cancer written 12 hours ago by David Soong • 10 • updated 10 hours ago by genomax ♦ 49k
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RSEM build for C. elegans
rna-seq written 11 hours ago by Michele Busby • 1.8k • updated 11 hours ago by h.mon ♦ 15k
1
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81
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CWL passing secondary files in a workflow
cwl written 1 day ago by ttom • 170 • updated 11 hours ago by biokcb • 120
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50
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Retrieve PubMed records based on some genes
gene python biopython pubmed written 12 hours ago by willson • 0
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193
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5 follow
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Forum: How is the job outlook in 2020 ?
forum outlook job written 1 day ago by plus.zer090 • 0 • updated 12 hours ago by Jean-Karim Heriche ♦ 15k
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51
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GATK UnifiedGenotyper doesn't output the variants in vcf files
snp written 13 hours ago by GK1610 • 30 • updated 13 hours ago by Pierre Lindenbaum ♦ 108k
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(Closed) How to create multidimensional dictionary in python?
gtf python dataframe written 13 hours ago by Santiansiye • 0
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71
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How to improve single-cells data ?
genome assembly next-gen sequence written 13 hours ago by darbinator • 0
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Job: Job: Bioinformatics Analyst at the University of Virginia, Charlottesville, VA, USA
R chip-seq job rna-seq written 14 hours ago by Stephen ♦ 2.6k • updated 13 hours ago by genomax ♦ 49k
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