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use gatk phased vcf as input file of HapCut2
hapcut2 gatk vcf phasing written 2.8 years ago by Peter Chung • 130
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Seurat obj conversion to Anndata not accurately creating var in a h5ad file
anndata R rna-seq seurat written 28 minutes ago by akh22 • 50
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7 follow
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Tutorial: Methylation Analysis Tutorial in R_part1
R tutorial methylation cancer written 5 months ago by Hamid Ghaedi • 1.2k
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9
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MultiQC real threshold in every parameter
quality control multiqc rna-seq fastqc written 1 hour ago by jimmy0958073736 • 0
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1
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34
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1
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renaming flow frames in a flowSet using flowCore
flow cytometry flowcore R written 9 hours ago by imdoingascience • 0 • updated 1 hour ago by jaro.slamecka • 90
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how to get the HBV infection information of the donors from ICGC database
gene genome sequence snp assembly written 8 days ago by smallblue0402 • 0 • updated 2 hours ago by Biostar ♦♦ 20
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I need to create a box plot for RPKM normalised data, can anyone please help me to make me understand, how to create a box plot for this given data
R rna-seq written 2 hours ago by rishav513 • 0
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18
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Good practice for merging different sets of Plink data files
gwas plink written 3 hours ago by guessit • 0
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Common SNPs (UCSC genome browser)
snp written 3 hours ago by sandsol97 • 0
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24
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63k
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280 follow
24
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 4.2 years ago by Istvan Albert ♦♦ 86k • updated 3 hours ago by meriv41409 • 0
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38
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1
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OMA standalone, parallelization
parallelization oma qsub sge written 10 hours ago by mar.ark.parr • 40 • updated 3 hours ago by adrian.altenhoff • 890
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22
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Where can I find the raw data for this GSE entry?
gse raw download written 3 hours ago by pomodoro_sinensis • 0
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How do I organize snakemake when not all jobs successfully output files from previous rule?
python workflow snakemake written 3 hours ago by timothy.delory • 20
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65
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1
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Need Insight into good courses/certifications to get as a bioinformatics scientist/computational biologist to boost resume & skills.
genome gene next-gen sequencing written 8 hours ago by screadore • 10 • updated 3 hours ago by hh • 0
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how to filter multi-KEGG_ko mapping after functional anntotion using eggnog-mapper
gene next-gen tool sequencing written 5 hours ago by MEITUO • 10 • updated 5 hours ago by ATpoint ♦ 46k
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ValueError: Invalid file path or buffer object type: <class 'snakemake.io.Namedlist'>
snakemake written 5 hours ago by Kaya_Lena • 0
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24
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How to save DEXSeq result to a .csv file ?
R rna-seq written 5 hours ago by Aynur • 40
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42
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Tool: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
sbgn pathway analysis visualization pathview tool written 6 hours ago by bigmawen • 370
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26
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Cut&Tag / ChIPseq analysis
cut&amp;tag chip-seq written 6 hours ago by wenbinm • 20
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49
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Job: Job Posting - Computational Biologist at UTSW
next-gen chip-seq job rna-seq written 6 hours ago by Laura.banaszynski • 0
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30
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HI-C analysis in the cloud environment
hi-c written 6 hours ago by Bogdan • 1.1k
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25
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How to get coverage for specific base(s), and for specific mismatch(es) per genomic range
rna-seq written 7 hours ago by lech.kaczmarczyk • 0
1
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82
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1
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ERROR::: vcf to PLINK
gwas plink vcfs written 7 hours ago by Manoj • 80 • updated 7 hours ago by Sam • 3.3k
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strange looking bcftools norm file
bcftools bcftools norm variant samtools written 7 hours ago by amy_houseman • 0
1
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1
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46
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1
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Identifying novel mRNA transcripts
rna-seq written 16 hours ago by Pranathi_Limmala • 0 • updated 8 hours ago by Kevin Blighe ♦ 71k
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65
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Cell type specificity analysis (microglia+oligodendrocytes)
gene rna-seq written 17 days ago by egenetics • 0 • updated 8 hours ago by Biostar ♦♦ 20
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29
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1
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How to download a list pdb codes contained in a csv file using
biopython pdblist() written 9 hours ago by jmungar2 • 0 • updated 8 hours ago by Mensur Dlakic • 9.0k
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Inter-species RNAseq normalisation
deseq2 salmon edger rna-seq expression written 8 hours ago by pprice3 • 0
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40
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to find deleted genes by using python
genome sequencing written 9 hours ago by iqrajaved323 • 0
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59
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Focusing on a handful of genes during RNA seq
gene assembly rna-seq written 9 hours ago by snow4964 • 0
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