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227
votes
11
answers
131k
views
108 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 8.0 years ago by Biomed4.4k • updated 5 months ago by WouterDeCoster36k
186
votes
5
answers
128k
views
97 follow
5
answers
How To Filter Mapped Reads With Samtools
samtools written 6.2 years ago by sohadb1357470 • updated 6 months ago by Simply Bioinformatics110
90
votes
5
answers
122k
views
39 follow
5
answers
What'S The Difference Between Cds And Orf?
cds orf written 6.6 years ago by shiy05280 • updated 7 weeks ago by jazzyl56600
305
votes
10
answers
106k
views
154 follow
10
answers
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel tools next-gen ngs tool written 5.9 years ago by ole.tange3.3k • updated 8 months ago by suny.bio0
36
votes
3
answers
90k
views
28 follow
3
answers
How To Update R In Ubuntu ?
R ubuntu written 5.1 years ago by Arpitha Hebbar180 • updated 8 months ago by dexetra.in0
114
votes
20
answers
90k
views
59 follow
20
answers
Is There A Free Alternative To Ingenuity Pathway Analysis?
pathway network written 7.9 years ago by Gon440 • updated 10 months ago by Francis Crick50
19
votes
4
answers
81k
views
9 follow
4
answers
Calculating P-Values From Z-Scores
R statistics written 7.0 years ago by Diana750 • updated 3 months ago by Kevin Blighe35k
191
votes
9
answers
76k
views
170 follow
9
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 4.4 years ago by Obi Griffith17k • updated 5 weeks ago by Renesh1.5k
98
votes
7
answers
76k
views
26 follow
7
answers
Correct Way To Parse A Fasta File In Python
fasta python parsing written 8.8 years ago by Eric Normandeau10k • updated 4 months ago by RamRS20k
148
votes
1
answer
74k
views
89 follow
1
answer
232
votes
25
answers
66k
views
58 follow
25
answers
32
votes
7
answers
56k
views
24 follow
7
answers
How To Draw A Heat Map For Gene Expression Data?
microarray heatmap written 7.6 years ago by Fahmida80 • updated 8 months ago by sonpham550
86
votes
6
answers
49k
views
34 follow
6
answers
51
votes
3
answers
49k
views
32 follow
3
answers
Extract Reads From A Bam File That Fall Within A Given Region
bam written 6.5 years ago by abi260 • updated 8 months ago by Alex Reynolds27k
87
votes
4
answers
48k
views
26 follow
4
answers
Generate vcf.gz file and its index file vcf.gz.tbi
vcf tabix written 6.1 years ago by lyz10302012310 • updated 4 months ago by zx87546.2k
63
votes
0
answers
48k
views
66 follow
0
answers
126
votes
9
answers
48k
views
66 follow
9
answers
110
votes
9
answers
48k
views
63 follow
9
answers
Database Of Tumor Suppressors And/Or Oncogenes
gene database tumor oncogene cancer written 7.1 years ago by Malachi Griffith17k • updated 6 weeks ago by 21angelicguitars0
72
votes
11
answers
47k
views
38 follow
11
answers
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
fasta written 6.5 years ago by Mchimich250 • updated 9 months ago by Kzra10
168
votes
21
answers
47k
views
70 follow
21
answers
How To Remove The Same Sequences In The Fasta Files?
fasta duplicates sequence written 8.3 years ago by Zhangleisdau270 • updated 9 weeks ago by michau10
159
votes
2
answers
46k
views
157 follow
2
answers
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 3.5 years ago by TriS3.5k • updated 5 weeks ago by skjobs01230
54
votes
1
answer
45k
views
39 follow
1
answer
Number of mapped reads from BAM file
reads bam sam mapping written 3.8 years ago by Prakki Rama2.2k • updated 5 months ago by iraia.munoa50
51
votes
3
answers
45k
views
23 follow
3
answers
Convertion Of Gff3 To Gtf
gtf gff written 6.7 years ago by geek_y8.8k • updated 8 months ago by Giuseppe0
52
votes
6
answers
43k
views
19 follow
6
answers
88
votes
14
answers
43k
views
32 follow
14
answers
Tool to generate proportional Venn Diagrams?
visualization written 7.8 years ago by Ryan D3.3k • updated 3 months ago by zx87546.2k
128
votes
17
answers
42k
views
108 follow
17
answers
Tutorial: Tools For Metagenomic Data Analysis
metagenomics next-gen tutorial written 6.1 years ago by vijay1.4k • updated 5 months ago by MetaTK10
75
votes
6
answers
42k
views
47 follow
6
answers
How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 4.6 years ago by krithika.gu250 • updated 6 months ago by Fred073040
178
votes
0
answers
42k
views
120 follow
0
answers
116
votes
11
answers
38k
views
32 follow
11
answers
Multiline Fasta To Single Line Fasta
fasta sequence written 7.6 years ago by Palu170 • updated 12 months ago by teckpor10
124
votes
5
answers
37k
views
89 follow
5
answers
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