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<prev • 14,162 results • page 1 of 473 • next >
194
votes
15
answers
214k
views
82 follow
15
answers
Gene Id Conversion Tool
mapping conversion written 8.5 years ago by Renee • 540 • updated 6 months ago by Jerry Zhu • 0
215
votes
11
answers
118k
views
104 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 7.2 years ago by Biomed ♦ 4.4k • updated 6 months ago by bioinfo8 • 90
26
votes
2
answers
116k
views
18 follow
2
answers
Understanding up and down regulated genes from LOG2 foldchange or foldchange
gene tutorial expression protein rna-seq written 3.9 years ago by Whoknows • 640 • updated 10 months ago by DragonDNA • 80
285
votes
10
answers
96k
views
141 follow
10
answers
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel tools next-gen ngs tool written 5.2 years ago by ole.tange • 3.0k
107
votes
20
answers
81k
views
52 follow
20
answers
Is There A Free Alternative To Ingenuity Pathway Analysis?
pathway network written 7.1 years ago by Gon • 400 • updated 7 weeks ago by Francis Crick • 50
72
votes
2
answers
71k
views
27 follow
2
answers
Blast - Formatting Output
format blast output written 4.4 years ago by timjoncooper • 140 • updated 4 months ago by sridhar.rg • 0
37
votes
3
answers
63k
views
24 follow
3
answers
Which Expression Units To Use, Fpkm Or Rpkm ?
rpkm fpkm rna-seq written 5.1 years ago by biorepine • 1.3k • updated 7 months ago by Renesh • 1.2k
135
votes
3
answers
63k
views
80 follow
3
answers
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 5.2 years ago by Malachi Griffith ♦ 16k
232
votes
25
answers
63k
views
58 follow
25
answers
Which Are The Best Programming Languages For A Bioinformatician?
subjective programming written 8.2 years ago by Giovanni M Dall'Olio ♦ 26k • updated 10 days ago by robert.branex • 0
160
votes
8
answers
62k
views
142 follow
8
answers
Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 3.7 years ago by Obi Griffith ♦ 16k • updated 12 weeks ago by simplitia • 20
99
votes
10
answers
56k
views
46 follow
10
answers
Useful Bash Commands To Handle Fasta Files
fasta list command-line bash written 6.2 years ago by Anima Mundi • 2.3k • updated 6 months ago by jrj.healey • 3.9k
167
votes
11
answers
54k
views
71 follow
11
answers
Drawing Chromosome Ideograms With Data
visualization ideogram chromosome written 8.1 years ago by Yuri • 1.5k • updated 5 months ago by bernatgel • 1.1k
30
votes
6
answers
51k
views
21 follow
6
answers
How To Draw A Heat Map For Gene Expression Data?
microarray heatmap written 6.9 years ago by Fahmida • 70 • updated 20 days ago by mitra.tajro • 0
158
votes
2
answers
47k
views
115 follow
2
answers
Tutorial: Analysing Microarray Data In Bioconductor
tutorial analysis bioconductor microarray written 5.6 years ago by Obi Griffith ♦ 16k • updated 6 months ago by Kevin Blighe ♦ 17k
123
votes
9
answers
44k
views
66 follow
9
answers
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing written 5.1 years ago by Nicolas Rosewick • 6.2k • updated 21 days ago by kristoffer.vittingseerup • 460
83
votes
4
answers
40k
views
18 follow
4
answers
What Are Phased And Unphased Genotypes?
genome genotyping written 7.0 years ago by Nick • 240 • updated 5 months ago by Jerry Zhu • 0
67
votes
11
answers
39k
views
35 follow
11
answers
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
fasta written 5.8 years ago by Mchimich • 250 • updated 15 days ago by Ezra Kitson • 10
115
votes
14
answers
38k
views
88 follow
14
answers
Tutorial: Tools For Metagenomic Data Analysis
metagenomics next-gen tutorial written 5.4 years ago by vijay • 1.3k • updated 18 minutes ago by hmurray • 10
309
votes
32
answers
37k
views
58 follow
32
answers
What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
genome visualization written 8.1 years ago by brentp ♦ 22k • updated 11 months ago by dariober ♦ 9.0k
53
votes
6
answers
36k
views
21 follow
6
answers
How To Split A Bam File By Chromosome
bam split chromosome written 5.9 years ago by GPR • 300 • updated 3 months ago by hewm2008 • 10
71
votes
4
answers
36k
views
22 follow
4
answers
Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
vcf written 5.4 years ago by lyz10302012 • 270 • updated 8 weeks ago by miaowzai • 40
26
votes
6
answers
35k
views
22 follow
6
answers
Converting Affymetrix Probes To Gene Ids
affymetrix conversion entrez written 4.8 years ago by Josh • 80 • updated 11 months ago by Poorya Parvizi • 20
116
votes
7
answers
34k
views
82 follow
7
answers
Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
cancer tutorial tcga maf music mutation written 5.0 years ago by Cyriac Kandoth ♦ 4.9k • updated 9 weeks ago by Shicheng Guo • 4.7k
145
votes
36
answers
33k
views
142 follow
36
answers
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 2.7 years ago by TriS • 3.3k • updated 3 days ago by K • 0
27
votes
5
answers
33k
views
25 follow
5
answers
Public Electronic Health Records Database
database written 5.0 years ago by Abhi • 1.4k • updated 4 months ago by wilthelight • 0
316
votes
26
answers
32k
views
85 follow
26
answers
Recommend Your Favorite Bioinformatics Books
books education written 8.1 years ago by Istvan Albert ♦♦ 76k • updated 4 months ago by KVC_bioinfo • 310
21
votes
3
answers
32k
views
3
answers
Minor allele frequency calculation
next-gen snp written 3.5 years ago by Tark • 30 • updated 7 months ago by gpatil • 0
64
votes
5
answers
31k
views
39 follow
5
answers
How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 3.9 years ago by krithika.gu • 190 • updated 10 months ago by bioinfo8 • 90
105
votes
11
answers
30k
views
30 follow
11
answers
Multiline Fasta To Single Line Fasta
fasta sequence written 6.9 years ago by Palu • 160 • updated 3 months ago by teckpor • 10
49
votes
4
answers
30k
views
29 follow
4
answers
Filtering Vcf File
vcf indel vcftools snp written 5.7 years ago by bioinfo • 680 • updated 6 months ago by DataFanatic • 70
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