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129
votes
34
answers
26k
views
131 follow
34
answers
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
tutorial tcga rna-seq survival written 2.2 years ago by TriS3.1k • updated 5 hours ago by lenazhou0
289
votes
16
answers
15k
views
125 follow
16
answers
News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 10 months ago by Istvan Albert ♦♦ 74k • updated 7 hours ago by nora40
3
votes
2
answers
2.8k
views
2
answers
4
votes
2
answers
2.6k
views
2
answers
RNA-seq GC content Bimodal distribution
rna-seq written 3.4 years ago by ruansun198330 • updated 11 hours ago by from the mountains40
2
votes
2
answers
2.3k
views
2
answers
Which kind of microRNAs expression are measured in TCGA?
genome bioinformmatics next-gen tcga rna-seq written 3.4 years ago by jack680 • updated 21 hours ago by gaoteng0
1
vote
2
answers
1.7k
views
2
answers
Mutation Taster Gdna Coordinates
coordinates mutation written 5.1 years ago by jp.of.mars0 • updated 15 hours ago by Biostar ♦♦ 20
0
votes
0
answers
1.3k
views
0
answers
Newbler, Parameters To Improve My Cdna Assembly De Novo
assembly written 3.6 years ago by aleix.arnau199010 • updated 3 hours ago by Biostar ♦♦ 20
0
votes
1
answer
692
views
1
answer
8
votes
0
answers
541
views
0
answers
14
votes
3
answers
469
views
7 follow
3
answers
Install DESeq2 and edgeR with Anaconda
deseq2 anaconda edger written 4 months ago by salamandra70 • updated 22 hours ago by Linkrw120
0
votes
3
answers
223
views
3
answers
Merge multiple VCF files (same variants, same sample) into one VCF file
vcf annotation written 8 weeks ago by Eleanore0 • updated 16 hours ago by thondeboer40
2
votes
1
answer
159
views
1
answer
which form of miRNA corresponding to TCGA?
mirnas written 6 weeks ago by a51151234530 • updated 21 hours ago by gaoteng0
0
votes
1
answer
159
views
1
answer
Gene id in bioDBnet web site
gene symbol gene id biodbnet written 4 months ago by niutster50 • updated 11 hours ago by Uma0
0
votes
0
answers
144
views
0
answers
running DESEQ2 results in GSEA
rna-seq written 26 days ago by lavanya.kannan0 • updated 9 hours ago by Biostar ♦♦ 20
0
votes
0
answers
137
views
0
answers
NCBI genome annotation compatible with HISAT
rna-seq written 5 weeks ago by rob.costa1234120 • updated 21 hours ago by Biostar ♦♦ 20
3
votes
0
answers
134
views
0
answers
2
votes
1
answer
134
views
1
answer
Nucleotide coverage if >5 reads
alignment sequence pileup written 20 hours ago by Vca805530 • updated 1 hour ago by Pierre Lindenbaum99k
1
vote
3
answers
131
views
3
answers
4
votes
1
answer
125
views
1
answer
Large table reformatting
.vcf file mapping linux written 21 hours ago by cjmcdermottroe20 • updated 20 hours ago by Pierre Lindenbaum99k
1
vote
0
answers
120
views
0
answers
3
votes
2
answers
117
views
2
answers
1
vote
0
answers
113
views
0
answers
0
votes
2
answers
111
views
2
answers
parse nxml file from pubmed
parsing nxml pubmed written 21 hours ago by Quak220 • updated 20 hours ago by Pierre Lindenbaum99k
0
votes
1
answer
108
views
1
answer
0
votes
0
answers
108
views
0
answers
problem in running IGV
software error igv written 21 hours ago by majeedaasim20
1
vote
1
answer
98
views
1
answer
Indel detectors for Ion Torrent data
indel written 21 hours ago by yelekley70 • updated 1 hour ago by Kevin Blighe3.3k
0
votes
1
answer
97
views
1
answer
How to download triple negative breast cancer RNA-seq fpkm data from GDC.
rna-seq sequencing written 19 hours ago by mtkk940 • updated 14 hours ago by Kevin Blighe3.3k
0
votes
0
answers
95
views
0
answers
BagFoot TF foot printing
R bagfoot bagfootr chip-seq written 22 hours ago by rbronste150
0
votes
0
answers
95
views
0
answers
0
votes
0
answers
93
views
0
answers
BED columns used by MACS2
bed macs2 written 18 hours ago by cpak198130
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