Badge: Good Question

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Badge: Good Question • All »

Awarded 1079 times for: asked a question that was upvoted at least 5 times

Recently awarded to

4 weeks ago to

Anima Mundi • 2.7k

Italy

For: How To Use Bedtools To Extract Promoters From A Mouse Bed File

6 weeks ago to

geek_y ♦ 11k

Barcelona

For: Convertion Of Gff3 To Gtf

8 weeks ago to

William • 4.7k

Europe

For: Best Copy Number Variation Tools

4 months ago to

mhockin • 580

United States

For: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.

4 months ago to

JourneyToAbyss • 110

For: Plink: Understanding LD Clumping vs Pruning

4 months ago to

Wox • 330

HUJI

For: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician

5 months ago to

igor ♦ 11k

United States

For: ATAC-seq peak calling with MACS

5 months ago to

m93 • 240

For: Definition of minor and major allele and connection with risk, effect, wildtype and reference allele

7 months ago to

elmahy2005 • 80

For: What is the best way to combine machine learning algorithms for feature selection such as Variable importance in Random Forest with differential expression analysis?

8 months ago to

krushnach80 • 810

For: extract dendrogram cluster from pheatmap

8 months ago to

steve • 2.6k

United States

For: How to tell which transcript is the canonical transcript?

8 months ago to

williamsbrian5064 • 250

For: Best tool for variant calling

9 months ago to

Joseph Hughes • 2.8k

Scotland, UK

For: When Is The Best Time To Submit Sequences To Public Databases Like Ncbi?

9 months ago to

always_learning • 1.0k

Doha, Qatar

For: Annotation for SV and CNV

9 months ago to

always_learning • 1.0k

Doha, Qatar

For: Gwas Stepwise Tutorial

10 months ago to

Pranavathiyani G • 310

Pondicherry, India

For: Ensembl ID to Gene Symbol

10 months ago to

Chirag Parsania • 1.8k

University of Macau

For: How to find intron co-ordinates from the gff file?

10 months ago to

Kevin Blighe ♦ 61k

University College London

For: Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?

11 months ago to

Biomonika (Noolean) ♦ 3.1k

State College, PA, USA

For: Visualize Insert Size For Mate-Pairs And Calculate Statistics

11 months ago to

predeus • 1.4k

Russia

For: Get a complete GSM-to-SRX/SRR table

11 months ago to

ta_awwad • 280

Frankfurt am Main

For: I would like to add gene names to a volcano plot obtained from DEseq2

11 months ago to

Leszek ♦ 4.0k

IIMCB, Poland

For: Plotting Density Of Snps On Chromosomes

12 months ago to

predeus • 1.4k

Russia

For: Get a complete GSM-to-SRX/SRR table

12 months ago to

iraia.munoa • 100

For: How to see if adjusting batch effect in RNA-seq is working or not

12 months ago to

rioualen • 410

France

For: Differences between trimming tools: cutadapt, bbduk and sickle

14 months ago to

andrew.j.skelton73 ♦ 6.0k

London

For: Illumina Instrument Type from fastq?

14 months ago to

Ashutosh Pandey ♦ 12k

Philadelphia

For: Assessing The Quality Of Mirna Rnaseq Data

14 months ago to

pixie@bioinfo • 1.4k

Université Paris, Saclay

For: Disease Associated Snps

15 months ago to

Bogdan • 1000

Palo Alto, CA, USA

For: annotation of SV (structural variants)

15 months ago to

Saad Khan • 400

United States

For: What is the difference between narrow peak, Broad peak and a gapped peak of a chip-seq experiment and is it okay to use all of these regions for downstream analysis

16 months ago to

armandorp • 60

For: Remove reads counts overlapping with blacklist regions in BAM files

16 months ago to

PoGibas ♦ 4.8k

Vilnius

For: Picking Random Genomic Positions

16 months ago to

Mozart • 190

For: PCA in a RNA seq analysis

16 months ago to

SOHAIL • 310

Beijing Institute of Genomics, CAS.

For: Haplotype Phasing with Shapeit2

16 months ago to

Peter Chung • 120

Hong Kong

For: question about the impute2 output format

17 months ago to

Rob ♦ 4.0k

United States

For: Suffix Array Vs. Compressed Suffix Array Vs. Bwt Search

18 months ago to

erwan.scaon • 790

Nantes - France

For: Retrieve genbank viral genomes

19 months ago to

grant.hovhannisyan • 2.0k

For: Technical replicates in RNAseq

19 months ago to

Mike • 1.6k

For: Single Cell RNAseq data analysis protocol

19 months ago to

chefarov • 130

Greece

For: Is Paired End analysis possible with FASTQC?

19 months ago to

Raygozak • 1.3k

State College, PA, Penn State

For: Coverage Calculation

19 months ago to

adampennycuick • 130

UCL, London

For: TCGA calling pipeline query

19 months ago to

erwan.scaon • 790

Nantes - France

For: Retrieve genbank viral genomes

20 months ago to

Chen • 990

For: Which Bioinformatics Tools Are Written In Python

20 months ago to

Anjan • 820

United States

For: How Does A Bioinformatics Scientist Document His/Her Work?

20 months ago to

Dirk • 80

For: Disease/Symptom Database

21 months ago to

Chris Miller ♦ 21k

Washington University in St. Louis, MO

For: Importing A Large Number Of References From Text

21 months ago to

Chen • 990

For: Which Bioinformatics Tools Are Written In Python

22 months ago to

Vanilla • 80

Hong Kong

For: Difference between chimeric alignments and multiple mapping

22 months ago to

Mike • 1.6k

For: Single Cell RNAseq data analysis protocol

22 months ago to

Ian ♦ 5.6k

University of Manchester, UK

For: How Best To Add Custom Variation Track To Ucsc Browser?

22 months ago to

Folder40g • 130

For: Bimodal GC content

22 months ago to

J.F.Jiang • 830

China

For: How To Plot Clustered Mutation Profiles Using Tcga Mutation Data

23 months ago to

Ar • 980

United States

For: Difference between the Fasta files from UCSC and Gencode/Ensembl

23 months ago to

Sean Davis ♦ 26k

National Institutes of Health, Bethesda, MD

For: What Are The Big Questions That Bioinformatics And Computational Biology Will Be Answering In The Next Few Years?

24 months ago to

h.mon ♦ 30k

Brazil

For: Where did EMBOSS go?

24 months ago to

MAPK • 1.5k

For: How to extract specific chromosome from vcf file

24 months ago to

always_learning • 1.0k

Doha, Qatar

For: Homozygous Indel/Snp & Heterozygous Indel/Snp

24 months ago to

Chirag Nepal • 2.2k

Copenhagen

For: GATK, SAM file doesn't have any read groups defined in the header

2.0 years ago to

Macspider • 3.0k

Vienna - BOKU

For: Best way to compare two samples in a VCF file

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1713 users visited in the last hour