Entering edit mode
13.3 years ago
Tiffani
▴
150
Why does mpileup call SO MANY less variants then pileup does? I know pileup is officially deprecated and doesn't even exist in the newest version of samtools that was released today, but my team needs to know WHY mpileup doesn't call as many variants.
Thanks
Thanks so much! I stumbled upon those commands just now. Thank you very much!
Has anyone got true-positive / false-positive stats for all the different modes?