Question: How to filter out imprecise variants from a vcf file
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gravatar for zhangz.cs
6.2 years ago by
zhangz.cs230
China
zhangz.cs230 wrote:

I used "vcf-annotate --filter -IMPRECISE" to filter out imprecise variants from a vcf file, but it failed. IMPRECISE is a key in the INFO field. Could you please help me to solve this problem? Thanks!

 

Regards,

Zhen

sequence genome • 1.9k views
ADD COMMENTlink modified 6.2 years ago • written 6.2 years ago by zhangz.cs230
0
gravatar for zhangz.cs
6.2 years ago by
zhangz.cs230
China
zhangz.cs230 wrote:

A solution was found by trial and error. I used bcftools filter to do this. The command I have run is described as follows:

$ bcftools filter -e INFO/IMPRECISE=1 out.vcf.gz

ADD COMMENTlink written 6.2 years ago by zhangz.cs230
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