I have a MIRA-seq data that I want to analyze. In the past I have used Bisulfite data for methylation analysis. There are a number of options available for Bisulfite data (e.g. aligners e.t.c. Aligning with Bismark etc and downstream analysis with methylkit/methpipe e.t.c.) I want to know what are the options or pipeline available for MIRA-seq data. Also what are the best practices for DNA methylation analysis with MIRA-seq.