Question: GC content of promoters
1
gravatar for asharmatelome
5.1 years ago by
United States
asharmatelome60 wrote:

I have a file from Chip-Seq data. I want to use this information to look for the GC content of promoters.

Which software I can use?

Thanks 

Ankur

chip-seq gc genome • 1.9k views
ADD COMMENTlink modified 5.1 years ago by Biostar ♦♦ 20 • written 5.1 years ago by asharmatelome60
3
gravatar for aditi.qamra
5.1 years ago by
aditi.qamra260
Toronto
aditi.qamra260 wrote:

The simplest would be to use nuc option in bedtools. 

bedtools nuc -fi $ref-fasta-file -bed $promoterbedfile > $outputfile

Similar questions have been answered before -

Calculating Gc Content For All Ccds

How To Calculate A Region‘ Gc Content In Reference Genome??

 

ADD COMMENTlink written 5.1 years ago by aditi.qamra260
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