Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Question: (Closed) SNP-set enrichment in GWAS analysis
0
gravatar for coleman_jonathan
6.4 years ago by
coleman_jonathan • 440
European Union
coleman_jonathan • 440 wrote:

I'm trying to see if a set of SNPs (prior candidates) are enriched in my GWAS results. This seems like something that should be do-able in PLINK, but I can't find an option... Does anyone know of a tool to do this?

 

Thanks.
gwas snp enrichment • 2.4k views
ADD COMMENT • link •
modified 6.4 years ago by chrchang523 ♦ 7.3k • written 6.4 years ago by coleman_jonathan • 440

Solved - see CC's answer

ADD REPLY • link modified 9 months ago by RamRS ♦ 30k • written 6.4 years ago by coleman_jonathan • 440
3
gravatar for chrchang523
6.4 years ago by
chrchang523 ♦ 7.3k
United States
chrchang523 ♦ 7.3k wrote:

PLINK 1.07's --set-test flag may do what you need: http://pngu.mgh.harvard.edu/~purcell/plink/anal.shtml#set
ADD COMMENT • link written 6.4 years ago by chrchang523 ♦ 7.3k

Thanks, Chris - don't know why I didn't spot that before!

ADD REPLY • link written 6.4 years ago by coleman_jonathan • 440
Please log in to add an answer.
The thread is closed. No new answers may be added.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1310 users visited in the last hour