There are compressed multiple alignments of 59 assemblies to the mouse genome (mm10/GRCm38, Dec. 2011)
Readme and directory:
We have thousands of mouse transcripts in bed format (file name: mouse.bed).
How can we get the alignments in FASTA format for all the mouse transcripts as follows (we only need the specified five species, not all the 60 species):
Thanks a lot, in advance.