Question: Annovar: filtering of deleterious mutations based on human healthy tissue, in place of Human SNPdb
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gravatar for sudhir07jnu
4.9 years ago by
sudhir07jnu30
United States
sudhir07jnu30 wrote:

Hi friends,

I am filtering deleterious mutations from VCF file with the ANNOVAR tool, which removes all general variations which are found in SNPdb. My problem is that I have sequencing data (VCF file) both from cancer tissue and healthy tissue. Now I have to filter those variations from cancer tissue which are found in healthy tissue. How can I use these VCF files in ANNOVAR to get patient specific mutations.

Thanks

Sudheer
 

ADD COMMENTlink written 4.9 years ago by sudhir07jnu30
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