How to I obtain all genotype calls from 1 specific hapmap individual like NA12891
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10.2 years ago
Duarte Molha ▴ 240

Hi guys

I am sorry if this is a dumb question ... but if I want to get all the genotype calls for a single specific individual like NA12891

What do I have to do?

Any format would do as long as I can extract the variation and genotype call from it.

Thank you all

Duarte

snp • 1.6k views
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10.2 years ago
matted 7.8k

If they were sequenced by the 1000 Genomes Project, you can get the data from them. The example on their FAQ does that for HG00098.

See: http://www.1000genomes.org/faq/can-i-get-genotypes-specific-individualpopulation-your-vcf-files

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