Question: Long reads Assembly Algorithms
0
gravatar for midox
5.9 years ago by
midox250
Tunisia
midox250 wrote:

hello, 
do you know of assembling long reads algorithms? 
thank you for your reply

ADD COMMENTlink modified 5.8 years ago • written 5.9 years ago by midox250

do you have other algorithms suggest me?

ADD REPLYlink written 5.8 years ago by midox250

Just a comment: you should reply to an answer using the 'Add Comment' button, not by adding a new answer.

ADD REPLYlink written 5.8 years ago by Chris Fields2.1k

thank you for your reply

yes, but I need long reads assembly algorithms.

ADD REPLYlink modified 12 weeks ago by RamRS26k • written 5.8 years ago by midox250
4
gravatar for Philipp Bayer
5.9 years ago by
Philipp Bayer6.6k
Australia/Perth/UWA
Philipp Bayer6.6k wrote:

By long reads, do you mean PacBio reads? Pacific Biosciences has a nice overview of algorithms here: https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Large-Genome-Assembly-with-PacBio-Long-Reads

ADD COMMENTlink written 5.9 years ago by Philipp Bayer6.6k
1
gravatar for Chris Fields
5.8 years ago by
Chris Fields2.1k
University of Illinois Urbana-Champaign
Chris Fields2.1k wrote:

What Philipp said. Also, if you have high-confidence (low error rate) reads like Moleculo you could try using an overlap-graph-based assembler like Celera assembler, Newbler, etc.

ADD COMMENTlink modified 12 weeks ago by RamRS26k • written 5.8 years ago by Chris Fields2.1k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1130 users visited in the last hour