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9.0 years ago
Philipp Bayer 7.8k
I recently found this great tutorial on how to do a two-pass annotation with MAKER and CEGMA, SNAP, Augustus, and GeneMark-ES. The repository is a treasure trove for genome assemblers.
I've tried this annotation with Swissprot-proteins and the little ESTs/RNAs I have for a 800Mbp genome using MPI and 12 CPUs and it took about 2 weeks.