Question: sciClone error with analysis
0
gravatar for cristinam09
5.0 years ago by
cristinam0920
United States
cristinam0920 wrote:

I manage to run the sciClone script with the demo data from github. I now have the following error message after I ask to writeClusterTable(sc, "results/clusters1")

Error in file(file, ifelse(append, "a", "w")) :
  cannot open the connection
In addition: Warning message:
In file(file, ifelse(append, "a", "w")) :
  cannot open file 'results/clusters1': No such file or directory

Any suggestion on where the problem may be?

Thank in advance to anyone who can help me.

 

ADD COMMENTlink modified 4.9 years ago by Chris Miller20k • written 5.0 years ago by cristinam0920
1

You have to point R the working directory where you want the results in your machine, probably you have the data in the local folder and there you have the results in one of the directory, you need to give the complete path where you want the results to be displayed.

ADD REPLYlink written 4.9 years ago by ivivek_ngs4.8k
0
gravatar for Chris Miller
4.9 years ago by
Chris Miller20k
Washington University in St. Louis, MO
Chris Miller20k wrote:

Make sure the results/ folder exists before running the script. I'll check the code in the morning and push a change if need be.

ADD COMMENTlink written 4.9 years ago by Chris Miller20k
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