I want to map GWAS SNPs (from here) to SNP IDs using R package (with pd.genomewidesnp.6).
From R package with this function (
dbGetQuery), I could get all SNPs IDs information (906600 SNPs). But I found something strange. Because hundreds SNPs from GWAS couldn't map to SNP IDs (6.0 Aﬀymetrix arrays IDs, e.g.,
For example, I couldn't find these SNPs with R package: rs7023329 or rs7412746.
Somebody can help me?
Many thanks :)