How to do analysis of ZDOCK server O/P of Protein-Protein docking scores.

Question

[rajkishore.ouatbi]

Please be kind to say me how to do analysis on the score generated by zdock server for protein-protein docking.

The top 5 models are generated by the server which states as best model to bind to the native protein which was submitted. But some scores were unable to analysed. Please check this link : http://zdock.umassmed.edu/results/a163acebb6/job58045.zd3.0.2.out

And also please mention me what all things are important for finding the better results in Protein - protein docking.

Answer 1

[João Rodrigues]

Hi,

The output of ZDOCK is explained here. The explanation on the scoring functions, how the models are deemed 'good', is here.

From the link you sent it seems all went well. What exactly is the the problem?