Question: Encode Cell Line Genomes - Are The Genome Sequences Available?
2
gravatar for Dr.Bunsen
8.5 years ago by
Dr.Bunsen150
Dr.Bunsen150 wrote:

Hello,

Does anyone know where I can get the genome sequences of the ENCODE cell lines K562 and GM12878?

I tried to find these genome sequences at UCSC, but was unsuccessful. I'm fairly certain that at least the GM12878 genome was sequences as part of the HapMap project. Does anyone know the answers to the following two questions:

  1. Have the genomes of these cell lines have been sequenced?

  2. If they have been sequenced, where can I obtain the DNA sequences from? (Preferable UCSC)

Thanks in advance for the help.

encode ucsc • 4.9k views
ADD COMMENTlink modified 5.5 years ago by Biostar ♦♦ 20 • written 8.5 years ago by Dr.Bunsen150
2
gravatar for Brett Thomas
8.5 years ago by
Brett Thomas290
Broad Institute
Brett Thomas290 wrote:

Not sure about K562, but GM12878 was sequenced as part of the 1000 genomes project. You can download the SNP calls here, and 1000genomes.org describes how to get some other data sets.

ADD COMMENTlink written 8.5 years ago by Brett Thomas290

I also do not believe that the K562 genome has been sequenced.

ADD REPLYlink written 8.5 years ago by Larry_Parnell16k

Thanks guys. I really appreciate your help.

ADD REPLYlink written 8.5 years ago by Dr.Bunsen150
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