I'm currently looking for sex-related genes and their pseudogenes in a reptilian that I sequenced, for which there is no reference.
I would like to look for specific gene names on my BLAST results which may subscribe to the description I made above.
My idea was to go through the literature which contains key words, such as "sex" "bird" "X" "y" "zw/zz" "reptiles", and extract words that are all in capitals, because that those might well be gene names, and then just get rid of common abbreviations.
I just saw http://biostar.stackexchange.com/questions/2205/web-tool-that-converts-a-pubmed-query-into-a-wordle-of-the-abstracts where Lars provides a good solution.
Does anyone have any other suggestions(which may not even involve abstract retrieval), probably more effective for what I'm trying to do, or that might be the best one?
Thanks in advance