I want to use R package GenAbel for the quality control of SNP data sets.
For this, I have ~ 100 processed SNP6 datasets (
birdseed.txt). The data looks like this:
Composite Element REF Call Confidence SNP_A-2131660 1 0.0545 SNP_A-1967418 2 0.0675 SNP_A-1969580 2 0.0021
Then, I want to use R package GenAbel with this file, but I don't know how to convert this file to GenAbel format.
Does anyone know how to do this?