How to generate .sra files from Fastq
2
2
Entering edit mode
9.9 years ago
ktsuttlemyre ▴ 40

I have been downloading a lot of NCBI short read archive files (.sra files) and I know how to convert them to bam, sam, fastq, etc but is there a way to generate my own .sra files? The tools in the SRA toolkit do not seem to convert to .sra

​Relevant Information:

fastq ncbi sequence sra • 6.4k views
ADD COMMENT
0
Entering edit mode

Out of curiosity: what would you like to do with *.sra files when you already have the *.bam/*.sam/*.fastq files?

ADD REPLY
4
Entering edit mode
9.9 years ago

I have never used it but Mothur has a command "make.sra".

ADD COMMENT
2
Entering edit mode
9.9 years ago

You would use one of the X-load tools from the SRA toolkit, where X is bam, fastq, etc. Now why you would actually want to do this is beyond me. You're better off sticking to BAM and fastq, which are actually normal formats used by tools.

ADD COMMENT

Login before adding your answer.

Traffic: 1946 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6