Allen Institute RNAseq data normalization

Question

[sehrrot]

Hi

Recently, I've got the RNAseq data from Brainspan (Allen institute; http://brainspan.org/). Just wondering whether this dataset was normalized for GC contents and batch-effect. I can't find that information on their document.

Answer 1

[vsochat]

I think you just haven't seen the documentation? Take a look here:

http://help.brain-map.org/download/attachments/3506181/Transcriptome_Profiling.pdf?version=1&modificationDate=1382036562736