Question: MG-RAST upload problem
0
gravatar for susan.klein
5.4 years ago by
susan.klein50
Oceania
susan.klein50 wrote:

Hi,

 

anyone else have a problem with MG-RAST at the moment? They say they have fixed their upload problem but I cannot get it accept a metadata file.. Always get the error below. Anyone else have a similar problem? They don't seem to reply to their support email address (too busy with perplexed users I suppose!).

Thanks,

Theo

[error] Invald file format: /mcs/bio/mg-rast/uploads/43e799b5483e0a0b6269561aa085a008/metadata_spreadsheet_IC5BvVk.xls
Traceback (most recent call last):
  File "/mcs/bio/mg-rast/prod/pipeline/bin/validate_metadata", line 689, in 
    sys.exit(main(sys.argv))
  File "/mcs/bio/mg-rast/prod/pipeline/bin/validate_metadata", line 669, in main
    mdvalid = validate_mdraw(mdraw, opts.skip)
UnboundLocalError: local variable 'mdraw' referenced before assignment

 

 

mg-rast metagenomics • 2.2k views
ADD COMMENTlink written 5.4 years ago by susan.klein50
2

I would try to debug the issue by uploading their metadata example. If that passes, the problem is on your end, if not, you have an additional argument for the problem on their end.

ADD REPLYlink modified 5.4 years ago • written 5.4 years ago by Pavel Senin1.9k
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