Entering edit mode
9.8 years ago
muhe1985
▴
20
I am from wet lab and in the very beginning of my bioinformatics learning curve. Here are some rookie questions:
- How to blast whole genome for putative transcription factor binding sites of which a JASPAR ID is available? After I am done with it, can I view it like I am viewing a peak calling BED file in UCSC genome browser?
- I have with me a BED file from published ChIP-Seq data, can I search for putative transcription factor binding site of another transcription factor I am interested in within the peaks of the BED file? Furthermore, can I search for putative binding site around the peaks in such given BED file?