Question: How to creat customs track from given jaspar weighted matrix and view in genome browser?
1
gravatar for muhe1985
5.2 years ago by
muhe198510
United States
muhe198510 wrote:

I am from wet lab and in the very begining of my bioinformativs learning curve. Here are some rookie questions:

1. How to blast whole genome for putative transcription factor binding sites of which a JASPAR ID is available? After I am done with it, can I view it like I am viewing a peak caling  BED file in USCS genome browser?

 

2. I have with me a BED file from published ChIP-Seq data, can I search for putative transcription factor binding site of another transcription factor I am interested in within the peaks of the BED file? Furthermore, can I search for putative binding site around the peaks in such given BED file?

 

 

 

 

chip-seq • 1.4k views
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