Question: problem installing psspred
0
gravatar for movahedi.marziyeh
4.8 years ago by
Iran, Islamic Republic Of
movahedi.marziyeh0 wrote:

Hi

I'm trying to install and use it in my project

i do all things that is needed for psspred , including :

1.dowload NR database for psipred

2. dowlnload blast (x64 linux) 2.2.25

3.download psspred

4. modified  $blastdir,$db,$PSSpred

the error is :

marzi@marzi-HP-Pavilion-dv6-Notebook-PC:~/Desktop/install/PSSpred$ perl PSSpred.pl 2M6M
running Psi-blast .....
[blastpgp] WARNING: Unable to open nr.pin
[makemat] FATAL ERROR: Unable to open file psitmp.chk

cp: cannot stat ‘psitmp.mtx’: No such file or directory
Running PSSpred1 ...
Running PSSpred2 ...
Running PSSpred3 ...
cannot open file pssm.txt
cannot open file mtx
Running PSSpred4 ...
cannot open file pssm.txt
cannot open file mtx
Running PSSpred5 ...
cannot open file pssm.txt
cannot open file mtx
Running PSSpred6 ...
cannot open file pssm.txt
cannot open file mtx
Running PSSpred7 ...
cannot open file pssm.txt
cannot open file mtx

 

software error • 1.4k views
ADD COMMENTlink modified 4.4 years ago by paulingene0 • written 4.8 years ago by movahedi.marziyeh0
0
gravatar for paulingene
4.4 years ago by
paulingene0
European Union
paulingene0 wrote:

Hi movahedi,

Your problem will be a databse.

Actions to do:

1-Verify if you have nr.pin in your database nr,

2-you can try to run your command in root.

I' waiting for your feedback,

ADD COMMENTlink written 4.4 years ago by paulingene0
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