Looking review paper about; From mapping NGS reads to quantification of gene expression

Question

[jack]

Hi all,

I'm looking for a good review paper, which discuss different tools and software from mapping NGS reads to quantifying gene expression levels.

Would someone give some suggestions?

Answer 1

[Vivek]

Systematic evaluation of spliced alignment programs for RNA-seq data

http://www.nature.com/nmeth/journal/v10/n12/full/nmeth.2722.html

Assessment of transcript reconstruction methods for RNA-seq

http://www.nature.com/nmeth/journal/v10/n12/full/nmeth.2714.html