setting mcmctree parameters
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6.8 years ago

Hello everyone,

I want to estimate the divergence time between species by the mcmctree in the paml software. I have read the tutorials. But I still have some questions.

1. The input data is codon sequences, 4-fold degeneration sites or 1st/2nd codon sites?

2. How to set the sigma2_gamma parameter.

Thank you!

genome software error next-gen alignment • 2.4k views
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