I have used BWA for the alignment purpose. The .sam files are obtained after BWA step. I have converted it to .bam
Now I want to sort the .bam file to get .sorted.bam for this i have used command:
~admin1/software/samtools-0.1.19/samtools sort xyz.bam xyz.sorted
But some Error is coming:-->
"[bam_sort_core] truncated file. Continue anyway."
Thanking you for consideration!!!
Mohit R. Navandar