Question: Phasing genotype per chromosomes in Beagle software
gravatar for somakina
6.7 years ago by
South Africa
somakina40 wrote:


I want to use beagle to phase my genotyped per chromosome, my data is in AB, format. When I run using the " java -Xmx1000m -jar beagle.jar unphased=fileA.bgl missing=? out=Myrun , I am not getting phase data per chromosomes and I am also expecting the program to show me running per chromosomes. Is there a specific command I should type together with the above command to achieve this, the other question is I don't have a reference panel. Where can I get the reference panel for Bovine if I were also to include it.  Any help will be appreciated


beagle phasing ab genotypes forum • 3.1k views
ADD COMMENTlink modified 6.7 years ago by Neilfws49k • written 6.7 years ago by somakina40
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